MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.2 nTPM
HPA Brain:42.8 nTPM
GTEx:6.2 nTPM
FANTOM5:68.5 Scaled Tags Per Million
Pig:30.8 nTPM
Mouse:18.0 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.1
2219 Male, age 76, both hemispheres 43.5
1833 Male, age 53, unknown 39.6
1830 Male, age 51, unknown 39.2
2828 Female, age 72, unknown 39.1
2666 Male, age 74, left hemisphere 38.9
1870 Female, age 42, unknown 37.9
1827 Male, age 72, unknown 35.2
2019 Male, age 18, unknown 33.4
2411 Female, age 72, unknown 32.1
2586 Male, age 75, left hemisphere 31.8
Dorsal raphe nucleus
nTPM: 36.9
2047 Male, age 72, unknown 38.3
1828 Male, age 53, unknown 37.7
2016 Female, age 72, unknown 37.7
2750 Male, age 76, both hemispheres 36.9
2298 Female, age 72, unknown 34.1
Inferior colliculus
nTPM: 39.5
2849 Male, age 72, unknown 47.1
1848 Female, age 42, unknown 39.7
1890 Male, age 53, unknown 37.7
2097 Female, age 72, unknown 33.4
Median raphe nucleus
nTPM: 42.8
2220 Male, age 76, midline 42.8
Periaquaductal grey, anterior
nTPM: 38.0
2502 Female, age 75, unknown 39.8
1947 Male, age 18, unknown 39.0
1795 Male, age 51, unknown 35.1
Periaquaductal grey, dorsal
nTPM: 41.1
2850 Male, age 76, both hemispheres 50.0
1840 Male, age 53, unknown 39.5
1831 Male, age 72, unknown 39.3
2464 Female, age 72, unknown 35.6
Periaquaductal grey, lateral
nTPM: 39.4
2140 Male, age 76, both hemispheres 42.4
2053 Male, age 18, unknown 39.4
2272 Male, age 74, both hemispheres 36.3
Pretectal area
nTPM: 39.9
1817 Female, age 42, unknown 43.4
2667 Female, age 75, unknown 43.2
2407 Male, age 75, both hemispheres 42.8
1816 Male, age 51, unknown 41.3
2825 Male, age 18, unknown 40.5
1815 Male, age 53, unknown 40.0
2224 Female, age 72, unknown 39.0
2273 Male, age 74, both hemispheres 38.6
1944 Female, age 72, unknown 37.4
2316 Male, age 76, right hemisphere 36.9
2007 Male, age 72, unknown 35.2
Red nucleus
nTPM: 37.7
2503 Female, age 72, unknown 40.4
2823 Male, age 76, right hemisphere 39.7
1904 Male, age 53, unknown 38.5
2584 Male, age 75, left hemisphere 38.4
1865 Male, age 51, unknown 38.2
1954 Female, age 42, unknown 38.0
2725 Female, age 75, unknown 37.5
1821 Female, age 72, unknown 37.4
2227 Male, age 72, unknown 37.0
2588 Male, age 74, left hemisphere 36.8
2769 Male, age 72, unknown 36.6
2785 Male, age 18, unknown 34.4
Substantia nigra
nTPM: 38.9
2699 Male, age 18, unknown 49.2
1916 Female, age 42, unknown 41.1
2665 Male, age 74, both hemispheres 40.6
1851 Male, age 51, unknown 38.7
2241 Male, age 72, unknown 38.6
1889 Female, age 72, unknown 38.4
1941 Male, age 53, unknown 38.0
2590 Female, age 75, unknown 35.4
2409 Female, age 72, unknown 34.7
2583 Male, age 75, right hemisphere 34.4
Superior colliculus
nTPM: 37.9
2664 Male, age 75, both hemispheres 42.4
1913 Female, age 42, unknown 39.4
1995 Male, age 72, unknown 39.2
2587 Male, age 74, left hemisphere 39.1
1839 Male, age 51, unknown 38.6
1895 Male, age 76, right hemisphere 37.2
2087 Female, age 72, unknown 36.5
2668 Female, age 75, unknown 36.5
1796 Male, age 53, unknown 36.0
2261 Male, age 18, unknown 34.2
Ventral tegmental area
nTPM: 37.7
2218 Male, age 76, both hemispheres 42.5
2223 Female, age 72, unknown 39.7
2021 Male, age 53, unknown 38.4
1942 Male, age 51, unknown 35.6
1915 Female, age 42, unknown 35.0
2410 Female, age 72, unknown 35.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 6.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.2
Samples: 139

Max nTPM: 10.6
Min nTPM: 0.9
Std nTPM: 1.5
Median nTPM: 6.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 10.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 9.4
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 9.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 9.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 9.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 8.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 8.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 8.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 8.4
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 8.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 8.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 68.5
FF:10158-103A5 76 years, female 68.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.1
Samples: 4

Max nTPM: 32.2
Min nTPM: 27.1
Sample A Female 27.1
Sample B Female 27.6
Sample C Male 32.2
Sample D Male 29.6
Midbrain
nTPM: 30.8
Samples: 4

Max nTPM: 32.6
Min nTPM: 29.3
Sample A Female 29.3
Sample B Female 30.9
Sample C Male 32.6
Sample D Male 30.4
Periaqueductal gray
nTPM: 29.1
Samples: 3

Max nTPM: 29.9
Min nTPM: 28.5
Sample B Female 28.5
Sample C Male 29.9
Sample D Male 28.9
Superior colliculi
nTPM: 28.3
Samples: 4

Max nTPM: 31.6
Min nTPM: 22.1
Sample A Female 28.4
Sample B Female 22.1
Sample C Male 31.1
Sample D Male 31.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.0
Samples: 4

Max nTPM: 19.2
Min nTPM: 15.4
Sample A Male 15.4
Sample B Male 19.2
Sample C Female 18.5
Sample D Female 18.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
68745054 Antisense, RP_050210_01_B09, Mouse strain C57BL/6J (56 days, male) 2.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org