MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.8 nTPM
HPA Brain:37.8 nTPM
GTEx:51.8 nTPM
FANTOM5:90.7 Scaled Tags Per Million
Pig:96.5 nTPM
Mouse:64.8 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.9
1870 Female, age 42, unknown 42.4
2219 Male, age 76, both hemispheres 40.0
1833 Male, age 53, unknown 35.7
2411 Female, age 72, unknown 35.4
2019 Male, age 18, unknown 33.4
1830 Male, age 51, unknown 31.8
2666 Male, age 74, left hemisphere 30.9
1827 Male, age 72, unknown 30.1
2586 Male, age 75, left hemisphere 29.6
2828 Female, age 72, unknown 20.0
Dorsal raphe nucleus
nTPM: 31.4
2750 Male, age 76, both hemispheres 33.0
2047 Male, age 72, unknown 32.3
2016 Female, age 72, unknown 31.9
1828 Male, age 53, unknown 31.3
2298 Female, age 72, unknown 28.4
Inferior colliculus
nTPM: 37.6
2097 Female, age 72, unknown 52.5
1890 Male, age 53, unknown 36.4
1848 Female, age 42, unknown 33.9
2849 Male, age 72, unknown 27.7
Median raphe nucleus
nTPM: 33.5
2220 Male, age 76, midline 33.5
Periaquaductal grey, anterior
nTPM: 36.1
2502 Female, age 75, unknown 39.2
1947 Male, age 18, unknown 38.9
1795 Male, age 51, unknown 30.2
Periaquaductal grey, dorsal
nTPM: 34.4
2850 Male, age 76, both hemispheres 36.6
2464 Female, age 72, unknown 34.5
1831 Male, age 72, unknown 34.1
1840 Male, age 53, unknown 32.5
Periaquaductal grey, lateral
nTPM: 28.7
2272 Male, age 74, both hemispheres 30.5
2053 Male, age 18, unknown 28.9
2140 Male, age 76, both hemispheres 26.6
Pretectal area
nTPM: 34.6
1816 Male, age 51, unknown 42.9
1944 Female, age 72, unknown 42.6
2273 Male, age 74, both hemispheres 37.3
2007 Male, age 72, unknown 36.2
1815 Male, age 53, unknown 34.9
1817 Female, age 42, unknown 34.0
2224 Female, age 72, unknown 33.4
2825 Male, age 18, unknown 33.1
2667 Female, age 75, unknown 32.7
2316 Male, age 76, right hemisphere 31.5
2407 Male, age 75, both hemispheres 22.1
Red nucleus
nTPM: 30.6
1821 Female, age 72, unknown 40.9
1954 Female, age 42, unknown 36.3
1865 Male, age 51, unknown 35.4
2227 Male, age 72, unknown 34.1
1904 Male, age 53, unknown 29.7
2769 Male, age 72, unknown 29.5
2823 Male, age 76, right hemisphere 28.8
2503 Female, age 72, unknown 28.3
2725 Female, age 75, unknown 28.3
2785 Male, age 18, unknown 27.2
2584 Male, age 75, left hemisphere 25.8
2588 Male, age 74, left hemisphere 22.6
Substantia nigra
nTPM: 37.8
2241 Male, age 72, unknown 56.3
2409 Female, age 72, unknown 43.4
1889 Female, age 72, unknown 40.4
2699 Male, age 18, unknown 40.3
1916 Female, age 42, unknown 38.0
1851 Male, age 51, unknown 34.8
1941 Male, age 53, unknown 33.4
2583 Male, age 75, right hemisphere 31.0
2590 Female, age 75, unknown 30.7
2665 Male, age 74, both hemispheres 29.5
Superior colliculus
nTPM: 34.0
2587 Male, age 74, left hemisphere 45.2
2668 Female, age 75, unknown 41.3
1796 Male, age 53, unknown 36.8
1895 Male, age 76, right hemisphere 35.2
2087 Female, age 72, unknown 34.9
1913 Female, age 42, unknown 32.6
2261 Male, age 18, unknown 31.4
2664 Male, age 75, both hemispheres 29.4
1839 Male, age 51, unknown 27.2
1995 Male, age 72, unknown 26.3
Ventral tegmental area
nTPM: 30.7
1915 Female, age 42, unknown 33.5
1942 Male, age 51, unknown 33.1
2223 Female, age 72, unknown 30.7
2218 Male, age 76, both hemispheres 30.5
2021 Male, age 53, unknown 29.9
2410 Female, age 72, unknown 26.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 51.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.8
Samples: 139

Max nTPM: 100.0
Min nTPM: 29.7
Std nTPM: 13.0
Median nTPM: 49.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 100.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 98.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 95.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 84.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 80.7
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 79.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 75.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 75.2
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 72.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 71.2
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 70.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 90.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 90.7
FF:10158-103A5 76 years, female 90.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 96.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 88.7
Samples: 4

Max nTPM: 93.5
Min nTPM: 84.3
Sample A Female 89.5
Sample B Female 87.3
Sample C Male 93.5
Sample D Male 84.3
Midbrain
nTPM: 96.5
Samples: 4

Max nTPM: 106.1
Min nTPM: 84.3
Sample A Female 103.7
Sample B Female 91.9
Sample C Male 84.3
Sample D Male 106.1
Periaqueductal gray
nTPM: 76.1
Samples: 3

Max nTPM: 81.7
Min nTPM: 71.2
Sample B Female 81.7
Sample C Male 71.2
Sample D Male 75.5
Superior colliculi
nTPM: 84.9
Samples: 4

Max nTPM: 96.9
Min nTPM: 69.7
Sample A Female 83.4
Sample B Female 69.7
Sample C Male 89.7
Sample D Male 96.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 64.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 64.8
Samples: 4

Max nTPM: 71.1
Min nTPM: 59.0
Sample A Male 59.0
Sample B Male 70.0
Sample C Female 71.1
Sample D Female 59.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
73514797 Antisense, RP_051121_03_B05, Mouse strain C57BL/6J (56 days, male) 0.3

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