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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
16.4
nTPM
Monaco:
51.3
nTPM
Schmiedel:
33.6
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
16.4
HPA sample
nTPM
gdT-cell nTPM: 9.2
Samples: 6
Max nTPM: 11.8
Min nTPM: 6.8
P10809_1007
6.8
P10809_1022
11.8
P10809_1041
8.5
P10809_1060
10.4
P10809_1077
8.6
P10809_1098
9.1
MAIT T-cell nTPM: 8.3
Samples: 6
Max nTPM: 10.1
Min nTPM: 5.9
P10809_1006
9.5
P10809_1024
10.0
P10809_1043
6.2
P10809_1062
8.0
P10809_1083
5.9
P10809_1097
10.1
Memory CD4 T-cell nTPM: 12.3
Samples: 6
Max nTPM: 15.8
Min nTPM: 6.4
P10809_1014
12.9
P10809_1026
15.2
P10809_1045
12.8
P10809_1064
6.4
P10809_1086
10.4
P10809_1113
15.8
Memory CD8 T-cell nTPM: 13.4
Samples: 5
Max nTPM: 20.9
Min nTPM: 9.9
P10809_1012
9.9
P10809_1027
15.5
P10809_1046
10.2
P10809_1065
10.3
P10809_1111
20.9
Naive CD4 T-cell nTPM: 15.6
Samples: 6
Max nTPM: 18.5
Min nTPM: 12.6
P10809_1015
12.6
P10809_1030
14.8
P10809_1049
17.5
P10809_1068
16.3
P10809_1085
13.8
P10809_1112
18.5
Naive CD8 T-cell nTPM: 15.7
Samples: 6
Max nTPM: 20.2
Min nTPM: 11.3
P10809_1016
15.1
P10809_1031
17.4
P10809_1050
17.0
P10809_1069
13.1
P10809_1087
11.3
P10809_1110
20.2
T-reg nTPM: 16.4
Samples: 6
Max nTPM: 30.0
Min nTPM: 6.7
P10809_1018
6.7
P10809_1037
14.1
P10809_1056
17.2
P10809_1075
30.0
P10809_1094
19.5
P10809_1106
11.1
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
51.3
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 47.4
Samples: 4
Max nTPM: 60.1
Min nTPM: 32.9
RHH5202_R3573
60.1
RHH5230_R3602
49.7
RHH5259_R3631
46.7
RHH5288_R3660
32.9
Effector memory CD8 T-cell nTPM: 29.7
Samples: 4
Max nTPM: 37.2
Min nTPM: 21.8
RHH5203_R3574
30.3
RHH5231_R3603
37.2
RHH5260_R3632
29.5
RHH5289_R3661
21.8
MAIT T-cell nTPM: 22.7
Samples: 4
Max nTPM: 35.8
Min nTPM: 11.8
RHH5233_R3605
11.8
RHH5205_R3576
35.8
RHH5262_R3634
28.8
RHH5297_R3663
14.3
Memory CD4 T-cell TFH nTPM: 51.3
Samples: 4
Max nTPM: 85.2
Min nTPM: 29.6
RHH5300_R3666
29.6
RHH5236_R3608
85.2
RHH5265_R3637
54.1
RHH5208_R3579
36.2
Memory CD4 T-cell Th1 nTPM: 37.0
Samples: 4
Max nTPM: 45.6
Min nTPM: 28.8
RHH5210_R3581
38.4
RHH5302_R3668
35.3
RHH5238_R3610
28.8
RHH5267_R3639
45.6
Memory CD4 T-cell Th1/Th17 nTPM: 27.3
Samples: 4
Max nTPM: 34.0
Min nTPM: 14.5
RHH5303_R3669
14.5
RHH5211_R3582
34.0
RHH5239_R3611
28.4
RHH5268_R3640
32.2
Memory CD4 T-cell Th17 nTPM: 28.5
Samples: 4
Max nTPM: 37.7
Min nTPM: 19.8
RHH5304_R3670
19.8
RHH5212_R3583
22.4
RHH5240_R3612
33.9
RHH5269_R3641
37.7
Memory CD4 T-cell Th2 nTPM: 49.7
Samples: 4
Max nTPM: 56.4
Min nTPM: 35.2
RHH5305_R3671
51.0
RHH5213_R3584
35.2
RHH5241_R3613
56.3
RHH5270_R3642
56.4
Naive CD4 T-cell nTPM: 49.6
Samples: 4
Max nTPM: 65.0
Min nTPM: 38.4
RHH5306_R3672
38.4
RHH5214_R3585
42.1
RHH5242_R3614
53.0
RHH5271_R3643
65.0
Naive CD8 T-cell nTPM: 40.0
Samples: 4
Max nTPM: 55.5
Min nTPM: 12.5
RHH5201_R3572
12.5
RHH5229_R3601
55.5
RHH5258_R3630
48.4
RHH5287_R3659
43.7
Non-Vd2 gdTCR nTPM: 36.1
Samples: 4
Max nTPM: 44.0
Min nTPM: 30.9
RHH5235_R3607
33.7
RHH5264_R3636
44.0
RHH5207_R3578
35.7
RHH5299_R3665
30.9
T-reg nTPM: 44.3
Samples: 4
Max nTPM: 50.5
Min nTPM: 37.8
RHH5301_R3667
37.8
RHH5237_R3609
45.3
RHH5266_R3638
43.7
RHH5209_R3580
50.5
Terminal effector memory CD4 T-cell nTPM: 29.6
Samples: 2
Max nTPM: 33.9
Min nTPM: 25.2
RHH5243_R3615
33.9
RHH5272_R3644
25.2
Terminal effector memory CD8 T-cell nTPM: 33.6
Samples: 4
Max nTPM: 53.6
Min nTPM: 25.7
RHH5232_R3604
27.2
RHH5204_R3575
25.7
RHH5261_R3633
53.6
RHH5296_R3662
27.9
Vd2 gdTCR nTPM: 37.8
Samples: 4
Max nTPM: 51.4
Min nTPM: 24.5
RHH5234_R3606
33.9
RHH5206_R3577
24.5
RHH5263_R3635
41.2
RHH5298_R3664
51.4
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
