MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:41.9 nTPM
HPA Brain:40.0 nTPM
GTEx:41.9 nTPM
FANTOM5:108.5 Scaled Tags Per Million
Pig:73.8 nTPM
Mouse:28.3 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.3
1830 Male, age 51, unknown 40.0
1833 Male, age 53, unknown 38.7
2666 Male, age 74, left hemisphere 38.6
1870 Female, age 42, unknown 38.2
2219 Male, age 76, both hemispheres 37.9
1827 Male, age 72, unknown 35.1
2019 Male, age 18, unknown 35.1
2411 Female, age 72, unknown 34.4
2828 Female, age 72, unknown 32.8
2586 Male, age 75, left hemisphere 32.3
Dorsal raphe nucleus
nTPM: 31.5
2016 Female, age 72, unknown 37.2
1828 Male, age 53, unknown 33.5
2750 Male, age 76, both hemispheres 31.3
2047 Male, age 72, unknown 29.9
2298 Female, age 72, unknown 25.8
Inferior colliculus
nTPM: 35.2
2849 Male, age 72, unknown 40.5
1848 Female, age 42, unknown 34.8
2097 Female, age 72, unknown 33.1
1890 Male, age 53, unknown 32.4
Median raphe nucleus
nTPM: 34.7
2220 Male, age 76, midline 34.7
Periaquaductal grey, anterior
nTPM: 32.9
1947 Male, age 18, unknown 35.2
2502 Female, age 75, unknown 35.1
1795 Male, age 51, unknown 28.4
Periaquaductal grey, dorsal
nTPM: 35.9
1831 Male, age 72, unknown 36.5
2850 Male, age 76, both hemispheres 36.4
1840 Male, age 53, unknown 35.4
2464 Female, age 72, unknown 35.4
Periaquaductal grey, lateral
nTPM: 32.6
2053 Male, age 18, unknown 34.8
2140 Male, age 76, both hemispheres 33.4
2272 Male, age 74, both hemispheres 29.7
Pretectal area
nTPM: 32.9
2316 Male, age 76, right hemisphere 37.7
2825 Male, age 18, unknown 36.2
1815 Male, age 53, unknown 34.9
2407 Male, age 75, both hemispheres 34.9
2224 Female, age 72, unknown 33.3
1817 Female, age 42, unknown 32.0
1816 Male, age 51, unknown 31.2
2273 Male, age 74, both hemispheres 31.2
1944 Female, age 72, unknown 31.1
2667 Female, age 75, unknown 30.0
2007 Male, age 72, unknown 29.3
Red nucleus
nTPM: 40.0
2503 Female, age 72, unknown 48.4
2725 Female, age 75, unknown 43.4
1954 Female, age 42, unknown 42.3
1904 Male, age 53, unknown 42.1
2588 Male, age 74, left hemisphere 41.7
1865 Male, age 51, unknown 40.4
1821 Female, age 72, unknown 40.2
2823 Male, age 76, right hemisphere 38.9
2227 Male, age 72, unknown 37.3
2584 Male, age 75, left hemisphere 37.0
2769 Male, age 72, unknown 35.2
2785 Male, age 18, unknown 33.5
Substantia nigra
nTPM: 33.3
2665 Male, age 74, both hemispheres 39.6
2699 Male, age 18, unknown 38.9
2409 Female, age 72, unknown 35.2
2241 Male, age 72, unknown 34.5
2590 Female, age 75, unknown 34.0
1851 Male, age 51, unknown 31.9
1889 Female, age 72, unknown 31.8
2583 Male, age 75, right hemisphere 31.2
1941 Male, age 53, unknown 30.6
1916 Female, age 42, unknown 25.7
Superior colliculus
nTPM: 35.2
1995 Male, age 72, unknown 41.8
1839 Male, age 51, unknown 39.7
2587 Male, age 74, left hemisphere 39.6
1913 Female, age 42, unknown 39.4
1895 Male, age 76, right hemisphere 39.0
2664 Male, age 75, both hemispheres 32.2
2668 Female, age 75, unknown 31.7
1796 Male, age 53, unknown 31.1
2087 Female, age 72, unknown 28.7
2261 Male, age 18, unknown 28.7
Ventral tegmental area
nTPM: 33.2
2223 Female, age 72, unknown 37.0
2021 Male, age 53, unknown 34.4
2410 Female, age 72, unknown 33.8
1942 Male, age 51, unknown 32.7
1915 Female, age 42, unknown 32.1
2218 Male, age 76, both hemispheres 29.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 41.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.9
Samples: 139

Max nTPM: 82.0
Min nTPM: 23.5
Std nTPM: 12.2
Median nTPM: 39.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 82.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 81.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 79.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 77.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 67.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 67.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 64.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 63.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 60.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 60.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 59.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 108.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 108.5
FF:10158-103A5 76 years, female 108.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 73.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 66.1
Samples: 4

Max nTPM: 74.6
Min nTPM: 60.0
Sample A Female 62.8
Sample B Female 60.0
Sample C Male 66.8
Sample D Male 74.6
Midbrain
nTPM: 73.2
Samples: 4

Max nTPM: 83.5
Min nTPM: 62.7
Sample A Female 83.5
Sample B Female 73.2
Sample C Male 62.7
Sample D Male 73.5
Periaqueductal gray
nTPM: 73.8
Samples: 3

Max nTPM: 77.8
Min nTPM: 68.5
Sample B Female 68.5
Sample C Male 77.8
Sample D Male 75.1
Superior colliculi
nTPM: 65.9
Samples: 4

Max nTPM: 78.8
Min nTPM: 51.8
Sample A Female 68.5
Sample B Female 51.8
Sample C Male 64.6
Sample D Male 78.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.3
Samples: 4

Max nTPM: 30.5
Min nTPM: 24.9
Sample A Male 24.9
Sample B Male 28.9
Sample C Female 30.5
Sample D Female 29.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
69262335 Antisense, RP_050303_02_B05, Mouse strain C57BL/6J (56 days, male) 2.7

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