MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:286.9 nTPM
HPA Brain:301.6 nTPM
GTEx:286.9 nTPM
FANTOM5:172.4 Scaled Tags Per Million
Mouse:403.0 nTPM
Allen mouse:9.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 301.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 217.1
1870 Female, age 42, unknown 260.5
2411 Female, age 72, unknown 244.7
2828 Female, age 72, unknown 240.9
1827 Male, age 72, unknown 222.2
1833 Male, age 53, unknown 221.8
1830 Male, age 51, unknown 221.0
2019 Male, age 18, unknown 197.5
2586 Male, age 75, left hemisphere 193.3
2666 Male, age 74, left hemisphere 190.0
2219 Male, age 76, both hemispheres 178.5
Dorsal raphe nucleus
nTPM: 301.6
2298 Female, age 72, unknown 388.3
2047 Male, age 72, unknown 321.6
2750 Male, age 76, both hemispheres 284.1
2016 Female, age 72, unknown 273.5
1828 Male, age 53, unknown 240.7
Inferior colliculus
nTPM: 226.6
2097 Female, age 72, unknown 243.1
2849 Male, age 72, unknown 228.2
1848 Female, age 42, unknown 220.9
1890 Male, age 53, unknown 214.0
Median raphe nucleus
nTPM: 283.3
2220 Male, age 76, midline 283.3
Periaquaductal grey, anterior
nTPM: 262.5
1947 Male, age 18, unknown 282.5
1795 Male, age 51, unknown 269.7
2502 Female, age 75, unknown 235.3
Periaquaductal grey, dorsal
nTPM: 254.7
2850 Male, age 76, both hemispheres 306.3
1840 Male, age 53, unknown 276.4
2464 Female, age 72, unknown 223.1
1831 Male, age 72, unknown 213.0
Periaquaductal grey, lateral
nTPM: 285.7
2272 Male, age 74, both hemispheres 333.9
2053 Male, age 18, unknown 261.8
2140 Male, age 76, both hemispheres 261.5
Pretectal area
nTPM: 240.2
2273 Male, age 74, both hemispheres 353.6
2224 Female, age 72, unknown 314.6
2825 Male, age 18, unknown 251.1
2667 Female, age 75, unknown 248.3
1817 Female, age 42, unknown 231.7
1815 Male, age 53, unknown 219.8
2316 Male, age 76, right hemisphere 215.9
2007 Male, age 72, unknown 214.1
1944 Female, age 72, unknown 199.9
1816 Male, age 51, unknown 199.7
2407 Male, age 75, both hemispheres 193.5
Red nucleus
nTPM: 224.7
1821 Female, age 72, unknown 253.3
1904 Male, age 53, unknown 251.7
2503 Female, age 72, unknown 246.3
1954 Female, age 42, unknown 243.5
2725 Female, age 75, unknown 241.4
1865 Male, age 51, unknown 232.5
2227 Male, age 72, unknown 226.9
2769 Male, age 72, unknown 224.8
2823 Male, age 76, right hemisphere 224.6
2785 Male, age 18, unknown 210.8
2588 Male, age 74, left hemisphere 174.9
2584 Male, age 75, left hemisphere 166.0
Substantia nigra
nTPM: 228.3
1851 Male, age 51, unknown 255.1
1916 Female, age 42, unknown 245.9
2699 Male, age 18, unknown 236.4
2241 Male, age 72, unknown 232.2
2590 Female, age 75, unknown 227.8
2665 Male, age 74, both hemispheres 223.2
2409 Female, age 72, unknown 221.2
1941 Male, age 53, unknown 220.9
1889 Female, age 72, unknown 215.9
2583 Male, age 75, right hemisphere 204.7
Superior colliculus
nTPM: 229.2
1995 Male, age 72, unknown 253.2
1796 Male, age 53, unknown 249.5
2587 Male, age 74, left hemisphere 246.7
1913 Female, age 42, unknown 239.9
2261 Male, age 18, unknown 239.8
1839 Male, age 51, unknown 231.9
2668 Female, age 75, unknown 223.0
2087 Female, age 72, unknown 207.1
1895 Male, age 76, right hemisphere 205.5
2664 Male, age 75, both hemispheres 194.9
Ventral tegmental area
nTPM: 255.8
1915 Female, age 42, unknown 267.7
2021 Male, age 53, unknown 265.4
2223 Female, age 72, unknown 264.0
2410 Female, age 72, unknown 260.6
1942 Male, age 51, unknown 241.0
2218 Male, age 76, both hemispheres 236.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 286.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 286.9
Samples: 139

Max nTPM: 688.9
Min nTPM: 112.5
Std nTPM: 90.8
Median nTPM: 260.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 688.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 595.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 537.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 529.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 504.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 502.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 469.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 456.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 447.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 446.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 412.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 172.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 172.4
FF:10158-103A5 76 years, female 172.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 403.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.6
Samples: 4

Max nTPM: 2.3
Min nTPM: 0.8
Sample A Male 1.2
Sample B Male 1.9
Sample C Female 2.3
Sample D Female 0.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.9
68910954 Antisense, RP_041208_02_A08, Mouse strain C57BL/6J (56 days, male) 9.9
Midbrain
Expression energy: 9.9
68910954 Antisense, RP_041208_02_A08, Mouse strain C57BL/6J (56 days, male) 9.9

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