MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.9 nTPM
HPA Brain:67.3 nTPM
GTEx:53.9 nTPM
FANTOM5:142.8 Scaled Tags Per Million
Pig:134.9 nTPM
Mouse:96.2 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 67.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.7
1870 Female, age 42, unknown 71.8
2411 Female, age 72, unknown 68.9
1833 Male, age 53, unknown 63.2
2019 Male, age 18, unknown 63.1
1830 Male, age 51, unknown 62.4
2586 Male, age 75, left hemisphere 57.3
1827 Male, age 72, unknown 57.2
2666 Male, age 74, left hemisphere 54.1
2828 Female, age 72, unknown 52.3
2219 Male, age 76, both hemispheres 46.3
Dorsal raphe nucleus
nTPM: 62.9
2750 Male, age 76, both hemispheres 71.7
2016 Female, age 72, unknown 62.1
2047 Male, age 72, unknown 61.1
1828 Male, age 53, unknown 60.2
2298 Female, age 72, unknown 59.5
Inferior colliculus
nTPM: 56.2
2097 Female, age 72, unknown 64.9
1890 Male, age 53, unknown 57.5
1848 Female, age 42, unknown 54.3
2849 Male, age 72, unknown 48.1
Median raphe nucleus
nTPM: 64.0
2220 Male, age 76, midline 64.0
Periaquaductal grey, anterior
nTPM: 59.4
2502 Female, age 75, unknown 69.3
1947 Male, age 18, unknown 57.9
1795 Male, age 51, unknown 51.0
Periaquaductal grey, dorsal
nTPM: 57.6
2850 Male, age 76, both hemispheres 60.3
2464 Female, age 72, unknown 58.2
1840 Male, age 53, unknown 56.1
1831 Male, age 72, unknown 55.9
Periaquaductal grey, lateral
nTPM: 53.9
2053 Male, age 18, unknown 56.5
2140 Male, age 76, both hemispheres 56.5
2272 Male, age 74, both hemispheres 48.8
Pretectal area
nTPM: 62.5
2667 Female, age 75, unknown 73.5
1817 Female, age 42, unknown 70.2
1815 Male, age 53, unknown 69.2
1816 Male, age 51, unknown 67.8
1944 Female, age 72, unknown 64.6
2007 Male, age 72, unknown 64.2
2224 Female, age 72, unknown 58.3
2273 Male, age 74, both hemispheres 57.5
2825 Male, age 18, unknown 56.8
2407 Male, age 75, both hemispheres 52.9
2316 Male, age 76, right hemisphere 52.0
Red nucleus
nTPM: 66.2
1821 Female, age 72, unknown 84.9
1904 Male, age 53, unknown 74.9
1954 Female, age 42, unknown 74.8
1865 Male, age 51, unknown 68.3
2823 Male, age 76, right hemisphere 66.7
2503 Female, age 72, unknown 66.5
2769 Male, age 72, unknown 65.1
2227 Male, age 72, unknown 64.2
2785 Male, age 18, unknown 63.1
2588 Male, age 74, left hemisphere 58.3
2725 Female, age 75, unknown 56.7
2584 Male, age 75, left hemisphere 50.6
Substantia nigra
nTPM: 67.3
2241 Male, age 72, unknown 82.4
1916 Female, age 42, unknown 73.5
2409 Female, age 72, unknown 70.7
1851 Male, age 51, unknown 70.5
2699 Male, age 18, unknown 67.4
1889 Female, age 72, unknown 65.6
2583 Male, age 75, right hemisphere 65.3
1941 Male, age 53, unknown 62.2
2665 Male, age 74, both hemispheres 59.2
2590 Female, age 75, unknown 56.4
Superior colliculus
nTPM: 59.6
1913 Female, age 42, unknown 67.1
2587 Male, age 74, left hemisphere 64.2
1995 Male, age 72, unknown 61.1
2261 Male, age 18, unknown 61.1
2087 Female, age 72, unknown 59.7
2664 Male, age 75, both hemispheres 58.8
2668 Female, age 75, unknown 58.7
1839 Male, age 51, unknown 57.3
1895 Male, age 76, right hemisphere 55.8
1796 Male, age 53, unknown 52.2
Ventral tegmental area
nTPM: 64.1
2223 Female, age 72, unknown 72.6
2410 Female, age 72, unknown 66.7
2218 Male, age 76, both hemispheres 63.0
1915 Female, age 42, unknown 61.5
1942 Male, age 51, unknown 60.8
2021 Male, age 53, unknown 60.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.9
Samples: 139

Max nTPM: 110.8
Min nTPM: 33.1
Std nTPM: 11.7
Median nTPM: 51.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 110.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 85.0
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 84.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 84.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 84.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 81.8
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 74.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 74.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 73.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 72.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 72.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 142.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 142.8
FF:10158-103A5 76 years, female 142.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 134.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 132.0
Samples: 4

Max nTPM: 148.9
Min nTPM: 107.7
Sample A Female 148.9
Sample B Female 107.7
Sample C Male 136.1
Sample D Male 135.4
Midbrain
nTPM: 134.9
Samples: 4

Max nTPM: 191.9
Min nTPM: 107.2
Sample A Female 191.9
Sample B Female 130.4
Sample C Male 110.2
Sample D Male 107.2
Periaqueductal gray
nTPM: 116.3
Samples: 3

Max nTPM: 121.7
Min nTPM: 111.2
Sample B Female 115.9
Sample C Male 121.7
Sample D Male 111.2
Superior colliculi
nTPM: 115.7
Samples: 4

Max nTPM: 131.8
Min nTPM: 86.7
Sample A Female 131.8
Sample B Female 86.7
Sample C Male 119.3
Sample D Male 124.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 96.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 96.2
Samples: 4

Max nTPM: 105.9
Min nTPM: 88.1
Sample A Male 88.1
Sample B Male 93.5
Sample C Female 105.9
Sample D Female 97.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
69817799 Antisense, RP_050510_03_G09, Mouse strain C57BL/6J (56 days, male) 1.1

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