MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.3 nTPM
HPA Brain:140.3 nTPM
GTEx:36.3 nTPM
FANTOM5:36.3 Scaled Tags Per Million
Pig:30.8 nTPM
Mouse:43.5 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 140.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 112.9
2828 Female, age 72, unknown 134.0
2586 Male, age 75, left hemisphere 132.1
1833 Male, age 53, unknown 127.3
2019 Male, age 18, unknown 125.7
1830 Male, age 51, unknown 120.4
2411 Female, age 72, unknown 112.4
1870 Female, age 42, unknown 106.6
2666 Male, age 74, left hemisphere 104.6
1827 Male, age 72, unknown 100.1
2219 Male, age 76, both hemispheres 66.3
Dorsal raphe nucleus
nTPM: 97.1
2016 Female, age 72, unknown 113.1
2750 Male, age 76, both hemispheres 102.9
1828 Male, age 53, unknown 100.2
2298 Female, age 72, unknown 84.7
2047 Male, age 72, unknown 84.4
Inferior colliculus
nTPM: 88.6
2849 Male, age 72, unknown 111.1
1848 Female, age 42, unknown 89.1
2097 Female, age 72, unknown 77.9
1890 Male, age 53, unknown 76.1
Median raphe nucleus
nTPM: 76.7
2220 Male, age 76, midline 76.7
Periaquaductal grey, anterior
nTPM: 93.2
2502 Female, age 75, unknown 110.8
1947 Male, age 18, unknown 85.4
1795 Male, age 51, unknown 83.3
Periaquaductal grey, dorsal
nTPM: 100.0
2850 Male, age 76, both hemispheres 130.8
2464 Female, age 72, unknown 102.9
1840 Male, age 53, unknown 91.1
1831 Male, age 72, unknown 75.2
Periaquaductal grey, lateral
nTPM: 99.5
2140 Male, age 76, both hemispheres 126.0
2053 Male, age 18, unknown 87.2
2272 Male, age 74, both hemispheres 85.4
Pretectal area
nTPM: 93.1
2667 Female, age 75, unknown 114.3
1817 Female, age 42, unknown 114.2
1815 Male, age 53, unknown 113.8
2825 Male, age 18, unknown 106.7
2316 Male, age 76, right hemisphere 105.4
2407 Male, age 75, both hemispheres 91.9
2224 Female, age 72, unknown 84.5
2007 Male, age 72, unknown 82.1
1944 Female, age 72, unknown 73.4
2273 Male, age 74, both hemispheres 69.2
1816 Male, age 51, unknown 68.1
Red nucleus
nTPM: 140.3
1904 Male, age 53, unknown 166.9
1865 Male, age 51, unknown 158.2
2227 Male, age 72, unknown 157.3
2769 Male, age 72, unknown 157.0
1954 Female, age 42, unknown 152.9
1821 Female, age 72, unknown 150.6
2823 Male, age 76, right hemisphere 140.1
2503 Female, age 72, unknown 138.4
2785 Male, age 18, unknown 136.3
2588 Male, age 74, left hemisphere 114.8
2725 Female, age 75, unknown 107.0
2584 Male, age 75, left hemisphere 103.5
Substantia nigra
nTPM: 90.8
2699 Male, age 18, unknown 114.0
2409 Female, age 72, unknown 103.3
1889 Female, age 72, unknown 95.3
2665 Male, age 74, both hemispheres 91.9
1851 Male, age 51, unknown 91.2
2590 Female, age 75, unknown 86.9
2583 Male, age 75, right hemisphere 85.8
1916 Female, age 42, unknown 83.5
2241 Male, age 72, unknown 83.5
1941 Male, age 53, unknown 72.7
Superior colliculus
nTPM: 95.1
1995 Male, age 72, unknown 114.3
1839 Male, age 51, unknown 113.6
1895 Male, age 76, right hemisphere 109.6
2664 Male, age 75, both hemispheres 99.1
1913 Female, age 42, unknown 96.6
2587 Male, age 74, left hemisphere 93.1
1796 Male, age 53, unknown 92.0
2668 Female, age 75, unknown 84.2
2087 Female, age 72, unknown 78.8
2261 Male, age 18, unknown 69.3
Ventral tegmental area
nTPM: 80.4
2410 Female, age 72, unknown 98.8
1915 Female, age 42, unknown 87.4
2218 Male, age 76, both hemispheres 79.8
1942 Male, age 51, unknown 78.3
2021 Male, age 53, unknown 69.8
2223 Female, age 72, unknown 68.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.3
Samples: 139

Max nTPM: 77.2
Min nTPM: 11.4
Std nTPM: 11.9
Median nTPM: 35.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 77.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 72.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 71.2
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 68.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 65.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 64.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 59.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 54.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 53.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 53.6
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 52.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.3
FF:10158-103A5 76 years, female 36.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26.4
Samples: 4

Max nTPM: 30.4
Min nTPM: 21.5
Sample A Female 25.3
Sample B Female 28.5
Sample C Male 21.5
Sample D Male 30.4
Midbrain
nTPM: 22.5
Samples: 4

Max nTPM: 33.4
Min nTPM: 16.6
Sample A Female 33.4
Sample B Female 22.8
Sample C Male 17.2
Sample D Male 16.6
Periaqueductal gray
nTPM: 19.3
Samples: 3

Max nTPM: 19.6
Min nTPM: 18.6
Sample B Female 19.6
Sample C Male 18.6
Sample D Male 19.6
Superior colliculi
nTPM: 30.8
Samples: 4

Max nTPM: 45.9
Min nTPM: 23.3
Sample A Female 27.7
Sample B Female 45.9
Sample C Male 23.3
Sample D Male 26.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 43.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.6
Samples: 4

Max nTPM: 46.8
Min nTPM: 39.3
Sample A Male 42.3
Sample B Male 39.3
Sample C Female 45.8
Sample D Female 46.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
69735676 Antisense, RP_050503_03_C07, Mouse strain C57BL/6J (56 days, male) 1.5

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