MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.2 nTPM
HPA Brain:89.3 nTPM
GTEx:42.2 nTPM
FANTOM5:118.0 Scaled Tags Per Million
Pig:153.8 nTPM
Mouse:171.2 nTPM
Allen mouse:10.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 89.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.4
2666 Male, age 74, left hemisphere 72.8
1833 Male, age 53, unknown 72.2
2586 Male, age 75, left hemisphere 69.4
1830 Male, age 51, unknown 69.3
2411 Female, age 72, unknown 67.7
1870 Female, age 42, unknown 67.2
2019 Male, age 18, unknown 66.4
1827 Male, age 72, unknown 66.2
2219 Male, age 76, both hemispheres 64.3
2828 Female, age 72, unknown 58.4
Dorsal raphe nucleus
nTPM: 63.8
2750 Male, age 76, both hemispheres 75.4
2298 Female, age 72, unknown 65.3
1828 Male, age 53, unknown 60.3
2047 Male, age 72, unknown 60.0
2016 Female, age 72, unknown 57.8
Inferior colliculus
nTPM: 62.2
2097 Female, age 72, unknown 72.5
1890 Male, age 53, unknown 62.7
1848 Female, age 42, unknown 58.8
2849 Male, age 72, unknown 55.0
Median raphe nucleus
nTPM: 70.3
2220 Male, age 76, midline 70.3
Periaquaductal grey, anterior
nTPM: 74.1
2502 Female, age 75, unknown 79.0
1947 Male, age 18, unknown 77.9
1795 Male, age 51, unknown 65.5
Periaquaductal grey, dorsal
nTPM: 59.9
1831 Male, age 72, unknown 62.5
2850 Male, age 76, both hemispheres 62.0
2464 Female, age 72, unknown 60.5
1840 Male, age 53, unknown 54.4
Periaquaductal grey, lateral
nTPM: 56.0
2053 Male, age 18, unknown 66.6
2272 Male, age 74, both hemispheres 53.4
2140 Male, age 76, both hemispheres 48.0
Pretectal area
nTPM: 81.1
1816 Male, age 51, unknown 121.9
1944 Female, age 72, unknown 111.9
1815 Male, age 53, unknown 100.4
2007 Male, age 72, unknown 92.0
1817 Female, age 42, unknown 91.9
2667 Female, age 75, unknown 73.3
2407 Male, age 75, both hemispheres 68.0
2273 Male, age 74, both hemispheres 59.7
2224 Female, age 72, unknown 58.9
2825 Male, age 18, unknown 57.9
2316 Male, age 76, right hemisphere 56.2
Red nucleus
nTPM: 68.6
1821 Female, age 72, unknown 77.4
1904 Male, age 53, unknown 74.1
2503 Female, age 72, unknown 72.6
2584 Male, age 75, left hemisphere 70.6
2785 Male, age 18, unknown 69.7
1865 Male, age 51, unknown 69.0
2823 Male, age 76, right hemisphere 68.9
2725 Female, age 75, unknown 67.8
2588 Male, age 74, left hemisphere 66.6
1954 Female, age 42, unknown 66.3
2227 Male, age 72, unknown 60.6
2769 Male, age 72, unknown 60.1
Substantia nigra
nTPM: 89.3
1916 Female, age 42, unknown 111.6
2241 Male, age 72, unknown 108.0
1889 Female, age 72, unknown 96.2
1941 Male, age 53, unknown 94.6
2409 Female, age 72, unknown 91.2
1851 Male, age 51, unknown 87.2
2699 Male, age 18, unknown 79.3
2583 Male, age 75, right hemisphere 77.9
2665 Male, age 74, both hemispheres 76.7
2590 Female, age 75, unknown 70.4
Superior colliculus
nTPM: 79.1
2087 Female, age 72, unknown 99.7
2668 Female, age 75, unknown 98.5
2261 Male, age 18, unknown 92.3
1913 Female, age 42, unknown 84.6
1995 Male, age 72, unknown 80.6
2664 Male, age 75, both hemispheres 73.3
2587 Male, age 74, left hemisphere 70.9
1895 Male, age 76, right hemisphere 66.2
1796 Male, age 53, unknown 64.1
1839 Male, age 51, unknown 61.2
Ventral tegmental area
nTPM: 71.6
2410 Female, age 72, unknown 84.4
2218 Male, age 76, both hemispheres 77.5
1915 Female, age 42, unknown 72.0
2223 Female, age 72, unknown 69.9
1942 Male, age 51, unknown 64.0
2021 Male, age 53, unknown 61.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.2
Samples: 139

Max nTPM: 66.3
Min nTPM: 26.2
Std nTPM: 7.3
Median nTPM: 41.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 66.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 65.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 64.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 63.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 56.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 55.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 55.6
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 55.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 54.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 53.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 53.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 118.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 118.0
FF:10158-103A5 76 years, female 118.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 153.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 137.7
Samples: 4

Max nTPM: 153.5
Min nTPM: 116.6
Sample A Female 142.6
Sample B Female 116.6
Sample C Male 153.5
Sample D Male 137.9
Midbrain
nTPM: 153.8
Samples: 4

Max nTPM: 201.2
Min nTPM: 128.2
Sample A Female 148.8
Sample B Female 137.0
Sample C Male 201.2
Sample D Male 128.2
Periaqueductal gray
nTPM: 107.6
Samples: 3

Max nTPM: 110.8
Min nTPM: 101.4
Sample B Female 110.8
Sample C Male 110.5
Sample D Male 101.4
Superior colliculi
nTPM: 138.3
Samples: 4

Max nTPM: 178.4
Min nTPM: 105.3
Sample A Female 127.2
Sample B Female 105.3
Sample C Male 178.4
Sample D Male 142.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 171.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 171.3
Samples: 4

Max nTPM: 173.8
Min nTPM: 166.4
Sample A Male 171.6
Sample B Male 173.8
Sample C Female 173.2
Sample D Female 166.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.1
69012635 Antisense, RP_050309_01_B09, Mouse strain C57BL/6J (56 days, male) 11.5
72080144 Antisense, RP_051017_03_C09, Mouse strain C57BL/6J (56 days, male) 8.7

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