MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:111.0 nTPM
HPA Brain:120.1 nTPM
GTEx:111.0 nTPM
FANTOM5:493.9 Scaled Tags Per Million
Pig:186.6 nTPM
Mouse:258.5 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 120.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 96.5
1827 Male, age 72, unknown 117.3
1870 Female, age 42, unknown 111.9
2411 Female, age 72, unknown 109.0
2219 Male, age 76, both hemispheres 104.8
2828 Female, age 72, unknown 91.8
2019 Male, age 18, unknown 89.4
2666 Male, age 74, left hemisphere 86.9
1833 Male, age 53, unknown 86.5
2586 Male, age 75, left hemisphere 83.9
1830 Male, age 51, unknown 83.5
Dorsal raphe nucleus
nTPM: 110.5
2298 Female, age 72, unknown 142.6
2047 Male, age 72, unknown 120.1
2750 Male, age 76, both hemispheres 99.8
1828 Male, age 53, unknown 98.8
2016 Female, age 72, unknown 91.3
Inferior colliculus
nTPM: 93.3
2097 Female, age 72, unknown 109.6
1890 Male, age 53, unknown 92.9
1848 Female, age 42, unknown 88.1
2849 Male, age 72, unknown 82.8
Median raphe nucleus
nTPM: 120.1
2220 Male, age 76, midline 120.1
Periaquaductal grey, anterior
nTPM: 108.8
1947 Male, age 18, unknown 121.0
2502 Female, age 75, unknown 105.6
1795 Male, age 51, unknown 99.9
Periaquaductal grey, dorsal
nTPM: 96.5
1840 Male, age 53, unknown 106.4
2850 Male, age 76, both hemispheres 102.9
2464 Female, age 72, unknown 89.5
1831 Male, age 72, unknown 87.3
Periaquaductal grey, lateral
nTPM: 90.3
2053 Male, age 18, unknown 96.4
2272 Male, age 74, both hemispheres 87.8
2140 Male, age 76, both hemispheres 86.7
Pretectal area
nTPM: 105.8
1816 Male, age 51, unknown 138.5
2007 Male, age 72, unknown 115.0
2224 Female, age 72, unknown 112.8
1817 Female, age 42, unknown 110.1
1944 Female, age 72, unknown 108.7
1815 Male, age 53, unknown 106.5
2667 Female, age 75, unknown 103.6
2825 Male, age 18, unknown 100.7
2407 Male, age 75, both hemispheres 97.3
2273 Male, age 74, both hemispheres 97.1
2316 Male, age 76, right hemisphere 73.2
Red nucleus
nTPM: 90.9
1821 Female, age 72, unknown 113.4
2725 Female, age 75, unknown 105.9
1954 Female, age 42, unknown 101.0
1904 Male, age 53, unknown 92.2
1865 Male, age 51, unknown 92.1
2503 Female, age 72, unknown 92.0
2584 Male, age 75, left hemisphere 86.3
2785 Male, age 18, unknown 85.7
2588 Male, age 74, left hemisphere 83.4
2227 Male, age 72, unknown 81.7
2769 Male, age 72, unknown 80.7
2823 Male, age 76, right hemisphere 76.4
Substantia nigra
nTPM: 112.1
2241 Male, age 72, unknown 144.5
1916 Female, age 42, unknown 131.1
1851 Male, age 51, unknown 118.0
2409 Female, age 72, unknown 116.2
1941 Male, age 53, unknown 115.0
1889 Female, age 72, unknown 113.9
2665 Male, age 74, both hemispheres 104.2
2590 Female, age 75, unknown 94.6
2699 Male, age 18, unknown 92.7
2583 Male, age 75, right hemisphere 91.1
Superior colliculus
nTPM: 94.2
2261 Male, age 18, unknown 110.1
2587 Male, age 74, left hemisphere 107.8
1796 Male, age 53, unknown 106.6
2087 Female, age 72, unknown 97.7
2668 Female, age 75, unknown 97.2
1913 Female, age 42, unknown 91.9
1839 Male, age 51, unknown 86.9
2664 Male, age 75, both hemispheres 86.0
1895 Male, age 76, right hemisphere 83.8
1995 Male, age 72, unknown 73.8
Ventral tegmental area
nTPM: 104.9
2410 Female, age 72, unknown 117.8
1915 Female, age 42, unknown 113.0
2223 Female, age 72, unknown 109.6
1942 Male, age 51, unknown 97.7
2218 Male, age 76, both hemispheres 97.3
2021 Male, age 53, unknown 94.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 111.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 111.0
Samples: 139

Max nTPM: 569.0
Min nTPM: 51.6
Std nTPM: 70.7
Median nTPM: 92.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 569.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 510.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 472.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 301.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 225.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 219.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 211.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 195.1
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 191.5
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 163.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 163.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 493.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 493.9
FF:10158-103A5 76 years, female 493.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 186.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 160.2
Samples: 4

Max nTPM: 197.4
Min nTPM: 113.9
Sample A Female 197.4
Sample B Female 139.8
Sample C Male 189.8
Sample D Male 113.9
Midbrain
nTPM: 186.6
Samples: 4

Max nTPM: 210.6
Min nTPM: 164.0
Sample A Female 164.5
Sample B Female 164.0
Sample C Male 210.6
Sample D Male 207.2
Periaqueductal gray
nTPM: 171.6
Samples: 3

Max nTPM: 200.8
Min nTPM: 146.7
Sample B Female 146.7
Sample C Male 200.8
Sample D Male 167.3
Superior colliculi
nTPM: 180.5
Samples: 4

Max nTPM: 201.4
Min nTPM: 134.6
Sample A Female 199.0
Sample B Female 134.6
Sample C Male 201.4
Sample D Male 186.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 258.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 258.5
Samples: 4

Max nTPM: 276.0
Min nTPM: 231.6
Sample A Male 231.6
Sample B Male 276.0
Sample C Female 269.9
Sample D Female 256.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
70528611 Antisense, RP_050623_03_A02, Mouse strain C57BL/6J (56 days, male) 1.3

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