HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:7.5 nTPM
HPA Brain:10.1 nTPM
GTEx:7.5 nTPM
FANTOM5:27.6 Scaled Tags Per Million
Pig:5.6 nTPM
Mouse:4.1 nTPM
Allen mouse:0.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA050760Antibody HPA053003
Glial cells MediumLow
Neuronal cells MediumLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 10.1
Sample id Sample description nTPM
Hippocampus
nTPM: 8.6
1898 Male, age 80, left hemisphere 9.6
2148 Female, age 91, left hemisphere 9.4
1911 Female, age 85, right hemisphere 8.7
2529 Female, age 94, left hemisphere 8.6
2621 Female, age 67, right hemisphere 8.1
1855 Male, age 76, left hemisphere 7.4
Dentate gyrus
nTPM: 8.3
2528 Male, age 74, both hemispheres 9.9
2531 Female, age 67, both hemispheres 9.1
2530 Female, age 94, left hemisphere 8.5
1927 Female, age 91, both hemispheres 8.4
2246 Female, age 85, both hemispheres 8.4
2010 Male, age 76, both hemispheres 5.4
Entorhinal gyrus
nTPM: 9.0
2686 Male, age 75, right hemisphere 11.0
2117 Female, age 91, right hemisphere 9.7
2764 Male, age 80, right hemisphere 9.4
1938 Female, age 85, left hemisphere 8.4
2613 Female, age 94, left hemisphere 8.1
1787 Male, age 76, left hemisphere 7.3
Hippocampus, CA1
nTPM: 9.5
2749 Male, age 80, left hemisphere 13.4
1873 Female, age 85, both hemispheres 9.5
2082 Female, age 91, right hemisphere 9.3
2527 Male, age 74, both hemispheres 8.7
2045 Male, age 76, both hemispheres 6.7
Hippocampus, CA2
nTPM: 8.3
1963 Male, age 80, left hemisphere 10.1
2249 Male, age 74, both hemispheres 9.8
1940 Female, age 85, left hemisphere 8.3
2113 Female, age 91, right hemisphere 8.3
2437 Female, age 94, left hemisphere 7.6
1892 Male, age 76, both hemispheres 5.7
Hippocampus, CA3
nTPM: 10.1
2137 Male, age 80, left hemisphere 13.2
2861 Female, age 67, both hemispheres 10.2
1867 Male, age 76, both hemispheres 10.0
2436 Male, age 74, both hemispheres 9.8
2620 Female, age 94, left hemisphere 9.2
1891 Female, age 85, both hemispheres 8.4
Parahippocampal cortex
nTPM: 8.0
2532 Female, age 72, left hemisphere 9.7
2692 Male, age 74, both hemispheres 8.5
1990 Female, age 91, right hemisphere 8.1
1850 Male, age 80, both hemispheres 8.0
2622 Female, age 67, right hemisphere 8.0
2245 Female, age 91, both hemispheres 7.9
2018 Male, age 76, both hemispheres 7.8
1933 Female, age 85, both hemispheres 7.6
2250 Female, age 67, right hemisphere 7.4
2693 Female, age 94, both hemispheres 6.8
Perirhinal gyrus
nTPM: 7.3
2521 Female, age 94, right hemisphere 8.3
1794 Male, age 80, right hemisphere 7.9
1841 Female, age 85, right hemisphere 7.9
1847 Female, age 91, left hemisphere 7.4
2848 Male, age 76, right hemisphere 5.2
Subiculum
nTPM: 8.6
1901 Male, age 80, both hemispheres 10.3
2729 Female, age 91, right hemisphere 9.0
2619 Male, age 74, both hemispheres 8.9
2042 Male, age 76, both hemispheres 8.6
1977 Female, age 85, both hemispheres 8.0
2438 Female, age 94, left hemisphere 6.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 7.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 7.5
Samples: 197

Max nTPM: 43.0
Min nTPM: 3.0
Std nTPM: 5.2
Median nTPM: 5.7
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 43.0
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 32.4
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 26.1
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 26.1
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 25.2
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 23.2
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 20.5
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 20.1
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 19.1
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 18.6
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 18.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 27.6
FF:10169-103B7 60 years, female 44.6
FF:10153-102I9 76 years, female 10.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 5.6
Pig sample Sample description nTPM
Subiculum
nTPM: 3.7
Samples: 4

Max nTPM: 4.6
Min nTPM: 2.9
Sample A Female 4.6
Sample B Female 3.4
Sample C Male 3.8
Sample D Male 2.9
Dorsal hippocampus
nTPM: 5.6
Samples: 4

Max nTPM: 6.6
Min nTPM: 4.7
Sample A Female 6.6
Sample B Female 5.9
Sample C Male 4.7
Sample D Male 5.0
Entorhinal cortex
nTPM: 3.7
Samples: 4

Max nTPM: 4.0
Min nTPM: 3.5
Sample A Female 4.0
Sample B Female 3.8
Sample C Male 3.6
Sample D Male 3.5
Ventral hippocampus
nTPM: 5.3
Samples: 4

Max nTPM: 7.1
Min nTPM: 3.6
Sample A Female 4.4
Sample B Female 3.6
Sample C Male 5.9
Sample D Male 7.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 4.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 4.1
Samples: 4

Max nTPM: 5.2
Min nTPM: 3.1
Sample A Male 3.9
Sample B Male 5.2
Sample C Female 4.2
Sample D Female 3.1
Hippocampal formation
nTPM: 4.0
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.2
Sample A Male 4.3
Sample B Male 4.5
Sample C Female 3.9
Sample D Female 3.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.4
69549300 Antisense, RP_050201_01_A02, Mouse strain C57BL/6J (56 days, male) 0.4

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