MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.2 nTPM
HPA Brain:201.2 nTPM
GTEx:44.2 nTPM
FANTOM5:112.2 Scaled Tags Per Million
Pig:86.8 nTPM
Mouse:39.8 nTPM
Allen mouse:14.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 201.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 174.7
2586 Male, age 75, left hemisphere 226.9
2666 Male, age 74, left hemisphere 191.8
2219 Male, age 76, both hemispheres 189.6
2828 Female, age 72, unknown 181.8
1827 Male, age 72, unknown 177.2
1833 Male, age 53, unknown 160.6
2019 Male, age 18, unknown 158.4
2411 Female, age 72, unknown 157.1
1870 Female, age 42, unknown 152.8
1830 Male, age 51, unknown 150.8
Dorsal raphe nucleus
nTPM: 170.3
2047 Male, age 72, unknown 201.7
2750 Male, age 76, both hemispheres 180.0
2016 Female, age 72, unknown 160.7
1828 Male, age 53, unknown 159.2
2298 Female, age 72, unknown 149.7
Inferior colliculus
nTPM: 165.3
2849 Male, age 72, unknown 174.7
1890 Male, age 53, unknown 164.9
1848 Female, age 42, unknown 162.6
2097 Female, age 72, unknown 158.8
Median raphe nucleus
nTPM: 164.2
2220 Male, age 76, midline 164.2
Periaquaductal grey, anterior
nTPM: 183.9
1947 Male, age 18, unknown 203.8
1795 Male, age 51, unknown 174.7
2502 Female, age 75, unknown 173.4
Periaquaductal grey, dorsal
nTPM: 150.5
1840 Male, age 53, unknown 178.5
2464 Female, age 72, unknown 150.0
1831 Male, age 72, unknown 143.9
2850 Male, age 76, both hemispheres 129.8
Periaquaductal grey, lateral
nTPM: 146.2
2053 Male, age 18, unknown 148.7
2272 Male, age 74, both hemispheres 145.6
2140 Male, age 76, both hemispheres 144.3
Pretectal area
nTPM: 167.1
1944 Female, age 72, unknown 186.9
1816 Male, age 51, unknown 184.4
2007 Male, age 72, unknown 180.6
1817 Female, age 42, unknown 171.5
2407 Male, age 75, both hemispheres 168.5
2667 Female, age 75, unknown 165.1
1815 Male, age 53, unknown 162.6
2825 Male, age 18, unknown 160.6
2273 Male, age 74, both hemispheres 154.7
2224 Female, age 72, unknown 154.6
2316 Male, age 76, right hemisphere 148.7
Red nucleus
nTPM: 155.2
2588 Male, age 74, left hemisphere 182.8
2584 Male, age 75, left hemisphere 177.6
2725 Female, age 75, unknown 158.7
1821 Female, age 72, unknown 157.3
2769 Male, age 72, unknown 154.6
2785 Male, age 18, unknown 153.1
2503 Female, age 72, unknown 152.3
2227 Male, age 72, unknown 152.1
1954 Female, age 42, unknown 150.6
1904 Male, age 53, unknown 147.3
1865 Male, age 51, unknown 141.6
2823 Male, age 76, right hemisphere 134.6
Substantia nigra
nTPM: 201.2
1916 Female, age 42, unknown 273.1
1851 Male, age 51, unknown 218.4
1941 Male, age 53, unknown 216.3
2665 Male, age 74, both hemispheres 203.0
2241 Male, age 72, unknown 196.8
2699 Male, age 18, unknown 187.0
2590 Female, age 75, unknown 184.1
1889 Female, age 72, unknown 181.8
2409 Female, age 72, unknown 181.6
2583 Male, age 75, right hemisphere 170.4
Superior colliculus
nTPM: 162.7
2668 Female, age 75, unknown 182.7
2664 Male, age 75, both hemispheres 178.1
2261 Male, age 18, unknown 175.3
2587 Male, age 74, left hemisphere 172.7
1796 Male, age 53, unknown 168.7
1839 Male, age 51, unknown 164.7
1895 Male, age 76, right hemisphere 162.8
2087 Female, age 72, unknown 154.6
1913 Female, age 42, unknown 143.4
1995 Male, age 72, unknown 124.3
Ventral tegmental area
nTPM: 179.4
1915 Female, age 42, unknown 207.0
1942 Male, age 51, unknown 190.9
2218 Male, age 76, both hemispheres 182.0
2410 Female, age 72, unknown 181.5
2021 Male, age 53, unknown 163.7
2223 Female, age 72, unknown 151.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 44.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.2
Samples: 139

Max nTPM: 65.6
Min nTPM: 20.2
Std nTPM: 6.6
Median nTPM: 43.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 65.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 62.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 58.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 57.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 56.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 55.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 54.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 54.1
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 53.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 53.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 53.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 112.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 112.2
FF:10158-103A5 76 years, female 112.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 86.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 86.9
Samples: 4

Max nTPM: 98.2
Min nTPM: 74.1
Sample A Female 93.5
Sample B Female 74.1
Sample C Male 98.2
Sample D Male 81.6
Midbrain
nTPM: 84.4
Samples: 4

Max nTPM: 92.3
Min nTPM: 73.9
Sample A Female 92.2
Sample B Female 73.9
Sample C Male 92.3
Sample D Male 79.2
Periaqueductal gray
nTPM: 74.7
Samples: 3

Max nTPM: 84.5
Min nTPM: 67.0
Sample B Female 72.7
Sample C Male 84.5
Sample D Male 67.0
Superior colliculi
nTPM: 80.2
Samples: 4

Max nTPM: 88.2
Min nTPM: 66.2
Sample A Female 82.4
Sample B Female 66.2
Sample C Male 83.8
Sample D Male 88.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 39.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.9
Samples: 4

Max nTPM: 46.2
Min nTPM: 27.6
Sample A Male 27.6
Sample B Male 46.2
Sample C Female 40.1
Sample D Female 45.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.7
70445293 Antisense, RP_050614_03_D12, Mouse strain C57BL/6J (56 days, male) 14.7

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