MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:50.7 nTPM
HPA Brain:139.6 nTPM
GTEx:50.7 nTPM
FANTOM5:2.3 Scaled Tags Per Million
Pig:65.1 nTPM
Mouse:92.3 nTPM
Allen mouse:15.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 139.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 82.5
2666 Male, age 74, left hemisphere 180.4
2219 Male, age 76, both hemispheres 116.2
2411 Female, age 72, unknown 110.7
1827 Male, age 72, unknown 79.3
1870 Female, age 42, unknown 76.8
1833 Male, age 53, unknown 67.6
1830 Male, age 51, unknown 60.4
2828 Female, age 72, unknown 59.9
2586 Male, age 75, left hemisphere 52.6
2019 Male, age 18, unknown 21.1
Dorsal raphe nucleus
nTPM: 115.4
2298 Female, age 72, unknown 154.4
2047 Male, age 72, unknown 138.9
1828 Male, age 53, unknown 112.6
2750 Male, age 76, both hemispheres 104.7
2016 Female, age 72, unknown 66.4
Inferior colliculus
nTPM: 73.2
2097 Female, age 72, unknown 81.9
2849 Male, age 72, unknown 76.0
1848 Female, age 42, unknown 73.9
1890 Male, age 53, unknown 60.8
Median raphe nucleus
nTPM: 139.6
2220 Male, age 76, midline 139.6
Periaquaductal grey, anterior
nTPM: 133.5
1947 Male, age 18, unknown 162.0
2502 Female, age 75, unknown 131.1
1795 Male, age 51, unknown 107.3
Periaquaductal grey, dorsal
nTPM: 78.9
1840 Male, age 53, unknown 92.5
2850 Male, age 76, both hemispheres 77.7
1831 Male, age 72, unknown 74.4
2464 Female, age 72, unknown 71.2
Periaquaductal grey, lateral
nTPM: 65.0
2053 Male, age 18, unknown 79.9
2140 Male, age 76, both hemispheres 65.3
2272 Male, age 74, both hemispheres 50.0
Pretectal area
nTPM: 59.4
2224 Female, age 72, unknown 114.3
2825 Male, age 18, unknown 110.3
2667 Female, age 75, unknown 66.3
1816 Male, age 51, unknown 56.1
2007 Male, age 72, unknown 55.9
2316 Male, age 76, right hemisphere 53.9
2407 Male, age 75, both hemispheres 42.9
1815 Male, age 53, unknown 42.5
1944 Female, age 72, unknown 41.9
2273 Male, age 74, both hemispheres 38.0
1817 Female, age 42, unknown 31.8
Red nucleus
nTPM: 44.2
1821 Female, age 72, unknown 63.4
2227 Male, age 72, unknown 58.3
2769 Male, age 72, unknown 57.8
2584 Male, age 75, left hemisphere 50.5
1954 Female, age 42, unknown 50.1
2823 Male, age 76, right hemisphere 46.6
1904 Male, age 53, unknown 44.1
1865 Male, age 51, unknown 39.0
2503 Female, age 72, unknown 38.0
2588 Male, age 74, left hemisphere 35.4
2725 Female, age 75, unknown 24.4
2785 Male, age 18, unknown 22.7
Substantia nigra
nTPM: 116.8
1916 Female, age 42, unknown 232.8
2241 Male, age 72, unknown 139.8
1851 Male, age 51, unknown 138.1
2699 Male, age 18, unknown 136.7
2665 Male, age 74, both hemispheres 135.5
1941 Male, age 53, unknown 125.6
2409 Female, age 72, unknown 98.1
1889 Female, age 72, unknown 78.5
2583 Male, age 75, right hemisphere 44.2
2590 Female, age 75, unknown 39.1
Superior colliculus
nTPM: 68.7
2668 Female, age 75, unknown 203.9
2261 Male, age 18, unknown 82.5
1895 Male, age 76, right hemisphere 74.1
1796 Male, age 53, unknown 73.3
1839 Male, age 51, unknown 66.9
2664 Male, age 75, both hemispheres 64.6
2587 Male, age 74, left hemisphere 49.9
2087 Female, age 72, unknown 36.4
1913 Female, age 42, unknown 20.7
1995 Male, age 72, unknown 15.0
Ventral tegmental area
nTPM: 112.9
1915 Female, age 42, unknown 152.0
2218 Male, age 76, both hemispheres 141.9
2410 Female, age 72, unknown 131.1
1942 Male, age 51, unknown 102.7
2021 Male, age 53, unknown 87.5
2223 Female, age 72, unknown 62.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.7
Samples: 139

Max nTPM: 223.0
Min nTPM: 2.1
Std nTPM: 48.4
Median nTPM: 33.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 223.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 186.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 183.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 174.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 168.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 165.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 158.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 155.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 146.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 133.3
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 133.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.3
FF:10158-103A5 76 years, female 2.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 65.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 65.1
Samples: 4

Max nTPM: 109.9
Min nTPM: 9.0
Sample A Female 98.5
Sample B Female 42.9
Sample C Male 109.9
Sample D Male 9.0
Midbrain
nTPM: 57.3
Samples: 4

Max nTPM: 130.6
Min nTPM: 7.0
Sample A Female 7.0
Sample B Female 37.0
Sample C Male 130.6
Sample D Male 54.5
Periaqueductal gray
nTPM: 40.7
Samples: 3

Max nTPM: 62.9
Min nTPM: 29.5
Sample B Female 29.5
Sample C Male 62.9
Sample D Male 29.6
Superior colliculi
nTPM: 40.4
Samples: 4

Max nTPM: 62.6
Min nTPM: 17.5
Sample A Female 43.0
Sample B Female 17.5
Sample C Male 62.6
Sample D Male 38.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 92.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 92.3
Samples: 4

Max nTPM: 100.1
Min nTPM: 80.6
Sample A Male 97.5
Sample B Male 90.9
Sample C Female 80.6
Sample D Female 100.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.4
68924841 Antisense, RP_050309_01_B04, Mouse strain C57BL/6J (56 days, male) 15.4
70301082 Antisense, RP_050309_01_B04, Mouse strain C57BL/6J (56 days, male) 11.8

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