MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.5 nTPM
HPA Brain:85.6 nTPM
GTEx:38.5 nTPM
FANTOM5:23.2 Scaled Tags Per Million
Pig:54.1 nTPM
Mouse:85.8 nTPM
Allen mouse:10.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 85.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 78.5
2586 Male, age 75, left hemisphere 106.7
2666 Male, age 74, left hemisphere 93.3
1827 Male, age 72, unknown 91.1
2828 Female, age 72, unknown 87.2
2019 Male, age 18, unknown 79.6
2219 Male, age 76, both hemispheres 72.3
2411 Female, age 72, unknown 67.5
1870 Female, age 42, unknown 64.1
1833 Male, age 53, unknown 63.0
1830 Male, age 51, unknown 59.8
Dorsal raphe nucleus
nTPM: 61.9
2298 Female, age 72, unknown 68.2
1828 Male, age 53, unknown 66.3
2047 Male, age 72, unknown 65.6
2750 Male, age 76, both hemispheres 59.1
2016 Female, age 72, unknown 50.5
Inferior colliculus
nTPM: 73.0
1848 Female, age 42, unknown 78.8
2097 Female, age 72, unknown 77.2
1890 Male, age 53, unknown 69.6
2849 Male, age 72, unknown 66.5
Median raphe nucleus
nTPM: 68.5
2220 Male, age 76, midline 68.5
Periaquaductal grey, anterior
nTPM: 85.6
1947 Male, age 18, unknown 92.6
2502 Female, age 75, unknown 85.9
1795 Male, age 51, unknown 78.3
Periaquaductal grey, dorsal
nTPM: 58.7
1840 Male, age 53, unknown 62.3
2464 Female, age 72, unknown 60.5
1831 Male, age 72, unknown 60.4
2850 Male, age 76, both hemispheres 51.6
Periaquaductal grey, lateral
nTPM: 52.2
2053 Male, age 18, unknown 58.7
2140 Male, age 76, both hemispheres 56.3
2272 Male, age 74, both hemispheres 41.7
Pretectal area
nTPM: 79.6
1816 Male, age 51, unknown 113.0
2007 Male, age 72, unknown 111.7
1817 Female, age 42, unknown 103.3
1944 Female, age 72, unknown 102.7
1815 Male, age 53, unknown 88.8
2407 Male, age 75, both hemispheres 70.7
2667 Female, age 75, unknown 68.1
2825 Male, age 18, unknown 65.2
2316 Male, age 76, right hemisphere 55.4
2224 Female, age 72, unknown 54.2
2273 Male, age 74, both hemispheres 42.9
Red nucleus
nTPM: 64.8
2584 Male, age 75, left hemisphere 85.7
2785 Male, age 18, unknown 75.6
2588 Male, age 74, left hemisphere 72.5
1821 Female, age 72, unknown 68.5
1954 Female, age 42, unknown 65.3
2227 Male, age 72, unknown 61.8
2725 Female, age 75, unknown 60.9
1904 Male, age 53, unknown 60.4
2769 Male, age 72, unknown 58.9
1865 Male, age 51, unknown 56.7
2503 Female, age 72, unknown 56.4
2823 Male, age 76, right hemisphere 54.7
Substantia nigra
nTPM: 82.9
2665 Male, age 74, both hemispheres 102.3
1916 Female, age 42, unknown 100.3
1941 Male, age 53, unknown 96.1
1889 Female, age 72, unknown 91.4
1851 Male, age 51, unknown 87.2
2583 Male, age 75, right hemisphere 86.7
2241 Male, age 72, unknown 76.3
2590 Female, age 75, unknown 67.9
2699 Male, age 18, unknown 60.8
2409 Female, age 72, unknown 59.6
Superior colliculus
nTPM: 77.5
2668 Female, age 75, unknown 106.0
2664 Male, age 75, both hemispheres 95.4
2087 Female, age 72, unknown 93.9
1895 Male, age 76, right hemisphere 80.1
1796 Male, age 53, unknown 79.3
2261 Male, age 18, unknown 78.9
1839 Male, age 51, unknown 73.9
2587 Male, age 74, left hemisphere 58.3
1913 Female, age 42, unknown 57.3
1995 Male, age 72, unknown 52.3
Ventral tegmental area
nTPM: 68.0
2218 Male, age 76, both hemispheres 77.6
2410 Female, age 72, unknown 75.0
1915 Female, age 42, unknown 72.7
1942 Male, age 51, unknown 69.2
2223 Female, age 72, unknown 58.4
2021 Male, age 53, unknown 55.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.5
Samples: 139

Max nTPM: 123.2
Min nTPM: 17.3
Std nTPM: 16.2
Median nTPM: 35.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 123.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 84.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 79.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 79.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 78.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 72.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 66.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 64.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 64.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 63.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 62.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.2
FF:10158-103A5 76 years, female 23.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 54.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 36.1
Samples: 4

Max nTPM: 46.4
Min nTPM: 26.0
Sample A Female 46.4
Sample B Female 29.4
Sample C Male 42.4
Sample D Male 26.0
Midbrain
nTPM: 46.4
Samples: 4

Max nTPM: 74.1
Min nTPM: 24.0
Sample A Female 24.0
Sample B Female 33.2
Sample C Male 74.1
Sample D Male 54.2
Periaqueductal gray
nTPM: 32.3
Samples: 3

Max nTPM: 37.8
Min nTPM: 25.8
Sample B Female 33.2
Sample C Male 37.8
Sample D Male 25.8
Superior colliculi
nTPM: 54.1
Samples: 4

Max nTPM: 70.7
Min nTPM: 36.0
Sample A Female 53.0
Sample B Female 36.0
Sample C Male 70.7
Sample D Male 56.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 85.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 85.8
Samples: 4

Max nTPM: 88.8
Min nTPM: 82.3
Sample A Male 87.4
Sample B Male 82.3
Sample C Female 88.8
Sample D Female 84.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.5
71764425 Antisense, RP_050926_01_B09, Mouse strain C57BL/6J (56 days, male) 10.5

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