MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.3 nTPM
HPA Brain:26.3 nTPM
GTEx:15.3 nTPM
FANTOM5:19.1 Scaled Tags Per Million
Pig:24.0 nTPM
Mouse:10.5 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.9
2586 Male, age 75, left hemisphere 30.1
2019 Male, age 18, unknown 27.2
2666 Male, age 74, left hemisphere 25.6
2219 Male, age 76, both hemispheres 24.4
1830 Male, age 51, unknown 23.0
2828 Female, age 72, unknown 22.5
1833 Male, age 53, unknown 22.2
1827 Male, age 72, unknown 22.0
2411 Female, age 72, unknown 21.0
1870 Female, age 42, unknown 20.6
Dorsal raphe nucleus
nTPM: 20.7
2047 Male, age 72, unknown 22.8
2016 Female, age 72, unknown 22.2
1828 Male, age 53, unknown 20.3
2298 Female, age 72, unknown 20.1
2750 Male, age 76, both hemispheres 18.1
Inferior colliculus
nTPM: 24.3
1890 Male, age 53, unknown 25.6
2097 Female, age 72, unknown 24.5
2849 Male, age 72, unknown 24.2
1848 Female, age 42, unknown 22.9
Median raphe nucleus
nTPM: 25.0
2220 Male, age 76, midline 25.0
Periaquaductal grey, anterior
nTPM: 23.6
2502 Female, age 75, unknown 26.2
1795 Male, age 51, unknown 23.3
1947 Male, age 18, unknown 21.4
Periaquaductal grey, dorsal
nTPM: 24.3
2850 Male, age 76, both hemispheres 26.7
1831 Male, age 72, unknown 26.0
2464 Female, age 72, unknown 22.5
1840 Male, age 53, unknown 22.0
Periaquaductal grey, lateral
nTPM: 22.3
2053 Male, age 18, unknown 26.1
2140 Male, age 76, both hemispheres 22.2
2272 Male, age 74, both hemispheres 18.8
Pretectal area
nTPM: 22.7
2407 Male, age 75, both hemispheres 27.7
2825 Male, age 18, unknown 25.9
1944 Female, age 72, unknown 24.5
2316 Male, age 76, right hemisphere 24.4
2007 Male, age 72, unknown 23.4
1816 Male, age 51, unknown 22.1
2273 Male, age 74, both hemispheres 22.0
2667 Female, age 75, unknown 21.0
1815 Male, age 53, unknown 19.8
2224 Female, age 72, unknown 19.4
1817 Female, age 42, unknown 19.1
Red nucleus
nTPM: 23.8
1904 Male, age 53, unknown 26.5
2588 Male, age 74, left hemisphere 26.0
1821 Female, age 72, unknown 25.6
2503 Female, age 72, unknown 25.6
2823 Male, age 76, right hemisphere 25.2
1954 Female, age 42, unknown 24.8
2785 Male, age 18, unknown 22.9
1865 Male, age 51, unknown 22.8
2584 Male, age 75, left hemisphere 22.7
2725 Female, age 75, unknown 22.3
2769 Male, age 72, unknown 21.4
2227 Male, age 72, unknown 20.2
Substantia nigra
nTPM: 26.3
2409 Female, age 72, unknown 38.7
1941 Male, age 53, unknown 33.1
2241 Male, age 72, unknown 26.8
2699 Male, age 18, unknown 25.9
2665 Male, age 74, both hemispheres 25.5
2583 Male, age 75, right hemisphere 24.2
2590 Female, age 75, unknown 23.7
1916 Female, age 42, unknown 21.9
1889 Female, age 72, unknown 21.8
1851 Male, age 51, unknown 21.4
Superior colliculus
nTPM: 22.5
1895 Male, age 76, right hemisphere 25.7
2087 Female, age 72, unknown 25.0
2668 Female, age 75, unknown 25.0
1995 Male, age 72, unknown 24.6
1839 Male, age 51, unknown 23.5
1913 Female, age 42, unknown 22.9
1796 Male, age 53, unknown 21.1
2587 Male, age 74, left hemisphere 20.7
2664 Male, age 75, both hemispheres 20.2
2261 Male, age 18, unknown 16.3
Ventral tegmental area
nTPM: 22.5
1942 Male, age 51, unknown 28.3
1915 Female, age 42, unknown 24.0
2218 Male, age 76, both hemispheres 23.9
2021 Male, age 53, unknown 21.2
2223 Female, age 72, unknown 19.9
2410 Female, age 72, unknown 17.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.3
Samples: 139

Max nTPM: 25.2
Min nTPM: 9.5
Std nTPM: 3.2
Median nTPM: 14.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 25.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 24.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 22.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 21.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 21.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 21.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 21.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 21.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 21.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 20.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 20.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.1
FF:10158-103A5 76 years, female 19.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.3
Samples: 4

Max nTPM: 24.6
Min nTPM: 20.0
Sample A Female 24.6
Sample B Female 23.2
Sample C Male 20.0
Sample D Male 21.4
Midbrain
nTPM: 21.0
Samples: 4

Max nTPM: 25.4
Min nTPM: 16.5
Sample A Female 21.1
Sample B Female 25.4
Sample C Male 16.5
Sample D Male 21.0
Periaqueductal gray
nTPM: 24.0
Samples: 3

Max nTPM: 26.8
Min nTPM: 22.3
Sample B Female 26.8
Sample C Male 22.3
Sample D Male 22.9
Superior colliculi
nTPM: 19.6
Samples: 4

Max nTPM: 22.1
Min nTPM: 17.2
Sample A Female 22.1
Sample B Female 17.2
Sample C Male 18.2
Sample D Male 20.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.5
Samples: 4

Max nTPM: 11.6
Min nTPM: 9.5
Sample A Male 11.6
Sample B Male 10.8
Sample C Female 9.5
Sample D Female 9.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
69873367 Antisense, RP_050512_01_B04, Mouse strain C57BL/6J (56 days, male) 0.9

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