HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni
Consensus:13.6 nTPM
HPA Brain:37.6 nTPM
GTEx:13.6 nTPM
FANTOM5:59.7 Scaled Tags Per Million
Pig:48.8 nTPM
Mouse:118.2 nTPM
Allen mouse:17.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039324
Glial cells Low
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 37.6
Sample id Sample description nTPM
Hippocampus
nTPM: 27.7
1898 Male, age 80, left hemisphere 43.4
1855 Male, age 76, left hemisphere 26.5
2529 Female, age 94, left hemisphere 25.0
1911 Female, age 85, right hemisphere 24.7
2148 Female, age 91, left hemisphere 23.2
2621 Female, age 67, right hemisphere 23.1
Dentate gyrus
nTPM: 26.0
1927 Female, age 91, both hemispheres 32.1
2010 Male, age 76, both hemispheres 30.6
2246 Female, age 85, both hemispheres 27.8
2528 Male, age 74, both hemispheres 24.6
2530 Female, age 94, left hemisphere 20.6
2531 Female, age 67, both hemispheres 20.4
Entorhinal gyrus
nTPM: 27.7
1938 Female, age 85, left hemisphere 34.8
2764 Male, age 80, right hemisphere 33.3
2613 Female, age 94, left hemisphere 27.4
1787 Male, age 76, left hemisphere 27.0
2686 Male, age 75, right hemisphere 23.1
2117 Female, age 91, right hemisphere 20.5
Hippocampus, CA1
nTPM: 33.4
2749 Male, age 80, left hemisphere 58.7
1873 Female, age 85, both hemispheres 33.5
2527 Male, age 74, both hemispheres 26.1
2045 Male, age 76, both hemispheres 25.6
2082 Female, age 91, right hemisphere 22.9
Hippocampus, CA2
nTPM: 30.5
1892 Male, age 76, both hemispheres 43.8
1963 Male, age 80, left hemisphere 39.8
2249 Male, age 74, both hemispheres 27.8
2437 Female, age 94, left hemisphere 26.7
1940 Female, age 85, left hemisphere 24.7
2113 Female, age 91, right hemisphere 20.2
Hippocampus, CA3
nTPM: 30.5
2137 Male, age 80, left hemisphere 46.5
1867 Male, age 76, both hemispheres 36.7
2436 Male, age 74, both hemispheres 29.2
1891 Female, age 85, both hemispheres 27.6
2861 Female, age 67, both hemispheres 24.2
2620 Female, age 94, left hemisphere 18.6
Parahippocampal cortex
nTPM: 28.6
1850 Male, age 80, both hemispheres 44.8
1990 Female, age 91, right hemisphere 30.9
1933 Female, age 85, both hemispheres 29.5
2250 Female, age 67, right hemisphere 28.3
2693 Female, age 94, both hemispheres 28.1
2245 Female, age 91, both hemispheres 28.0
2018 Male, age 76, both hemispheres 27.5
2532 Female, age 72, left hemisphere 26.1
2692 Male, age 74, both hemispheres 23.3
2622 Female, age 67, right hemisphere 19.4
Perirhinal gyrus
nTPM: 37.6
1794 Male, age 80, right hemisphere 43.8
1847 Female, age 91, left hemisphere 42.6
1841 Female, age 85, right hemisphere 39.3
2521 Female, age 94, right hemisphere 31.6
2848 Male, age 76, right hemisphere 30.7
Subiculum
nTPM: 27.0
1977 Female, age 85, both hemispheres 33.7
1901 Male, age 80, both hemispheres 31.9
2619 Male, age 74, both hemispheres 25.7
2438 Female, age 94, left hemisphere 25.1
2042 Male, age 76, both hemispheres 23.6
2729 Female, age 91, right hemisphere 21.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 13.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.6
Samples: 197

Max nTPM: 31.8
Min nTPM: 3.1
Std nTPM: 5.7
Median nTPM: 12.5
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 31.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 31.2
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 30.4
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 27.7
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 27.4
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 26.8
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 26.3
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 25.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 25.3
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 24.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 24.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 59.7
FF:10169-103B7 60 years, female 83.0
FF:10153-102I9 76 years, female 36.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 48.8
Pig sample Sample description nTPM
Subiculum
nTPM: 46.5
Samples: 4

Max nTPM: 57.1
Min nTPM: 41.5
Sample A Female 57.1
Sample B Female 41.5
Sample C Male 44.6
Sample D Male 42.9
Dorsal hippocampus
nTPM: 48.4
Samples: 4

Max nTPM: 55.4
Min nTPM: 38.1
Sample A Female 55.4
Sample B Female 49.0
Sample C Male 51.2
Sample D Male 38.1
Entorhinal cortex
nTPM: 48.8
Samples: 4

Max nTPM: 54.7
Min nTPM: 44.5
Sample A Female 51.1
Sample B Female 54.7
Sample C Male 44.5
Sample D Male 44.9
Ventral hippocampus
nTPM: 43.0
Samples: 4

Max nTPM: 50.1
Min nTPM: 35.1
Sample A Female 50.1
Sample B Female 35.1
Sample C Male 41.3
Sample D Male 45.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 118.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 118.2
Samples: 4

Max nTPM: 129.0
Min nTPM: 110.3
Sample A Male 110.3
Sample B Male 116.0
Sample C Female 117.4
Sample D Female 129.0
Hippocampal formation
nTPM: 113.1
Samples: 4

Max nTPM: 119.9
Min nTPM: 103.4
Sample A Male 111.1
Sample B Male 119.9
Sample C Female 117.9
Sample D Female 103.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 17.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 17.0
77465026 Antisense, RP_070129_03_A02, Mouse strain C57BL/6J (56 days, male) 17.0

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