MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:72.0 nTPM
HPA Brain:106.9 nTPM
GTEx:72.0 nTPM
FANTOM5:239.0 Scaled Tags Per Million
Pig:40.6 nTPM
Mouse:53.9 nTPM
Allen mouse:5.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 106.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 94.8
2586 Male, age 75, left hemisphere 112.7
2828 Female, age 72, unknown 104.8
2666 Male, age 74, left hemisphere 104.6
2019 Male, age 18, unknown 100.0
2219 Male, age 76, both hemispheres 97.5
1830 Male, age 51, unknown 92.1
1833 Male, age 53, unknown 89.0
1870 Female, age 42, unknown 85.9
1827 Male, age 72, unknown 83.4
2411 Female, age 72, unknown 78.4
Dorsal raphe nucleus
nTPM: 64.0
2750 Male, age 76, both hemispheres 83.6
2016 Female, age 72, unknown 72.8
1828 Male, age 53, unknown 66.4
2047 Male, age 72, unknown 50.7
2298 Female, age 72, unknown 46.5
Inferior colliculus
nTPM: 72.6
2849 Male, age 72, unknown 87.4
1848 Female, age 42, unknown 72.3
1890 Male, age 53, unknown 67.2
2097 Female, age 72, unknown 63.5
Median raphe nucleus
nTPM: 52.8
2220 Male, age 76, midline 52.8
Periaquaductal grey, anterior
nTPM: 67.8
2502 Female, age 75, unknown 73.6
1795 Male, age 51, unknown 71.8
1947 Male, age 18, unknown 58.0
Periaquaductal grey, dorsal
nTPM: 61.9
2464 Female, age 72, unknown 72.0
1831 Male, age 72, unknown 66.9
1840 Male, age 53, unknown 59.9
2850 Male, age 76, both hemispheres 48.6
Periaquaductal grey, lateral
nTPM: 63.6
2053 Male, age 18, unknown 72.6
2140 Male, age 76, both hemispheres 59.4
2272 Male, age 74, both hemispheres 58.7
Pretectal area
nTPM: 80.4
1815 Male, age 53, unknown 102.7
2316 Male, age 76, right hemisphere 102.3
2007 Male, age 72, unknown 89.1
1944 Female, age 72, unknown 87.6
1817 Female, age 42, unknown 84.5
2407 Male, age 75, both hemispheres 79.0
2667 Female, age 75, unknown 76.5
1816 Male, age 51, unknown 75.0
2825 Male, age 18, unknown 71.7
2224 Female, age 72, unknown 64.0
2273 Male, age 74, both hemispheres 51.6
Red nucleus
nTPM: 106.9
2823 Male, age 76, right hemisphere 133.5
2588 Male, age 74, left hemisphere 122.0
2503 Female, age 72, unknown 118.4
2785 Male, age 18, unknown 113.0
1865 Male, age 51, unknown 111.3
1904 Male, age 53, unknown 104.2
2769 Male, age 72, unknown 103.4
2725 Female, age 75, unknown 101.7
2227 Male, age 72, unknown 100.7
1954 Female, age 42, unknown 98.0
1821 Female, age 72, unknown 88.7
2584 Male, age 75, left hemisphere 88.5
Substantia nigra
nTPM: 79.7
2699 Male, age 18, unknown 92.8
2409 Female, age 72, unknown 84.5
2583 Male, age 75, right hemisphere 81.9
1851 Male, age 51, unknown 81.8
1889 Female, age 72, unknown 81.4
2665 Male, age 74, both hemispheres 80.4
1941 Male, age 53, unknown 77.4
2590 Female, age 75, unknown 76.4
1916 Female, age 42, unknown 73.8
2241 Male, age 72, unknown 67.0
Superior colliculus
nTPM: 90.9
1995 Male, age 72, unknown 108.2
1913 Female, age 42, unknown 107.6
1895 Male, age 76, right hemisphere 99.7
2668 Female, age 75, unknown 92.8
1796 Male, age 53, unknown 86.9
2587 Male, age 74, left hemisphere 86.1
1839 Male, age 51, unknown 86.0
2664 Male, age 75, both hemispheres 83.3
2087 Female, age 72, unknown 82.3
2261 Male, age 18, unknown 76.4
Ventral tegmental area
nTPM: 76.4
2223 Female, age 72, unknown 87.4
2410 Female, age 72, unknown 82.3
1942 Male, age 51, unknown 75.1
1915 Female, age 42, unknown 72.1
2218 Male, age 76, both hemispheres 71.9
2021 Male, age 53, unknown 69.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 72.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.0
Samples: 139

Max nTPM: 160.4
Min nTPM: 30.8
Std nTPM: 26.9
Median nTPM: 65.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 160.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 153.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 142.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 137.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 133.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 133.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 131.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 126.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 119.7
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 118.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 116.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 239.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 239.0
FF:10158-103A5 76 years, female 239.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 40.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.3
Samples: 4

Max nTPM: 42.7
Min nTPM: 23.7
Sample A Female 32.8
Sample B Female 23.7
Sample C Male 38.1
Sample D Male 42.7
Midbrain
nTPM: 36.3
Samples: 4

Max nTPM: 53.5
Min nTPM: 28.0
Sample A Female 28.0
Sample B Female 34.6
Sample C Male 53.5
Sample D Male 28.9
Periaqueductal gray
nTPM: 25.9
Samples: 3

Max nTPM: 30.8
Min nTPM: 23.2
Sample B Female 30.8
Sample C Male 23.2
Sample D Male 23.6
Superior colliculi
nTPM: 40.7
Samples: 4

Max nTPM: 63.8
Min nTPM: 26.5
Sample A Female 32.8
Sample B Female 26.5
Sample C Male 63.8
Sample D Male 39.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 53.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.9
Samples: 4

Max nTPM: 58.9
Min nTPM: 46.5
Sample A Male 54.4
Sample B Male 46.5
Sample C Female 58.9
Sample D Female 55.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.6
69837922 Antisense, RP_050224_01_B10, Mouse strain C57BL/6J (56 days, male) 5.6

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