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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
35.1
nTPM
Monaco:
193.6
nTPM
Schmiedel:
66.2
TPM
T-CELLS - Annotated protein expression
Pending normal tissue analysis
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
35.1
HPA sample
nTPM
gdT-cell nTPM: 35.1
Samples: 6
Max nTPM: 41.8
Min nTPM: 20.6
P10809_1007
39.0
P10809_1022
40.8
P10809_1041
32.3
P10809_1060
35.9
P10809_1077
41.8
P10809_1098
20.6
MAIT T-cell nTPM: 28.2
Samples: 6
Max nTPM: 34.6
Min nTPM: 22.0
P10809_1006
31.2
P10809_1024
31.2
P10809_1043
22.0
P10809_1062
26.8
P10809_1083
34.6
P10809_1097
23.3
Memory CD4 T-cell nTPM: 16.9
Samples: 6
Max nTPM: 29.6
Min nTPM: 7.8
P10809_1014
18.3
P10809_1026
11.4
P10809_1045
9.4
P10809_1064
29.6
P10809_1086
24.9
P10809_1113
7.8
Memory CD8 T-cell nTPM: 27.9
Samples: 5
Max nTPM: 39.2
Min nTPM: 15.3
P10809_1012
28.9
P10809_1027
30.0
P10809_1046
26.1
P10809_1065
39.2
P10809_1111
15.3
Naive CD4 T-cell nTPM: 5.3
Samples: 6
Max nTPM: 15.0
Min nTPM: 1.0
P10809_1015
5.5
P10809_1030
1.6
P10809_1049
4.1
P10809_1068
4.3
P10809_1085
15.0
P10809_1112
1.0
Naive CD8 T-cell nTPM: 19.2
Samples: 6
Max nTPM: 37.7
Min nTPM: 7.0
P10809_1016
14.7
P10809_1031
13.8
P10809_1050
13.0
P10809_1069
29.2
P10809_1087
37.7
P10809_1110
7.0
T-reg nTPM: 11.1
Samples: 6
Max nTPM: 18.4
Min nTPM: 6.0
P10809_1018
11.5
P10809_1037
8.3
P10809_1056
6.0
P10809_1075
18.4
P10809_1094
11.0
P10809_1106
11.1
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
193.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 60.0
Samples: 4
Max nTPM: 80.9
Min nTPM: 39.3
RHH5202_R3573
53.0
RHH5230_R3602
80.9
RHH5259_R3631
66.8
RHH5288_R3660
39.3
Effector memory CD8 T-cell nTPM: 131.2
Samples: 4
Max nTPM: 160.8
Min nTPM: 99.5
RHH5203_R3574
160.8
RHH5231_R3603
99.5
RHH5260_R3632
108.6
RHH5289_R3661
156.0
MAIT T-cell nTPM: 109.3
Samples: 4
Max nTPM: 157.1
Min nTPM: 81.4
RHH5233_R3605
157.1
RHH5205_R3576
115.6
RHH5262_R3634
81.4
RHH5297_R3663
82.9
Memory CD4 T-cell TFH nTPM: 43.8
Samples: 4
Max nTPM: 53.5
Min nTPM: 32.0
RHH5300_R3666
48.9
RHH5236_R3608
53.5
RHH5265_R3637
40.6
RHH5208_R3579
32.0
Memory CD4 T-cell Th1 nTPM: 62.5
Samples: 4
Max nTPM: 95.9
Min nTPM: 27.6
RHH5210_R3581
42.7
RHH5302_R3668
27.6
RHH5238_R3610
95.9
RHH5267_R3639
83.7
Memory CD4 T-cell Th1/Th17 nTPM: 79.5
Samples: 4
Max nTPM: 118.6
Min nTPM: 49.2
RHH5303_R3669
49.2
RHH5211_R3582
78.1
RHH5239_R3611
118.6
RHH5268_R3640
72.0
Memory CD4 T-cell Th17 nTPM: 64.3
Samples: 4
Max nTPM: 74.6
Min nTPM: 53.3
RHH5304_R3670
57.4
RHH5212_R3583
71.8
RHH5240_R3612
53.3
RHH5269_R3641
74.6
Memory CD4 T-cell Th2 nTPM: 26.6
Samples: 4
Max nTPM: 41.1
Min nTPM: 13.7
RHH5305_R3671
17.6
RHH5213_R3584
34.0
RHH5241_R3613
13.7
RHH5270_R3642
41.1
Naive CD4 T-cell nTPM: 43.9
Samples: 4
Max nTPM: 53.7
Min nTPM: 37.0
RHH5306_R3672
37.0
RHH5214_R3585
53.7
RHH5242_R3614
42.6
RHH5271_R3643
42.2
Naive CD8 T-cell nTPM: 46.9
Samples: 4
Max nTPM: 63.4
Min nTPM: 33.9
RHH5201_R3572
33.9
RHH5229_R3601
63.4
RHH5258_R3630
34.5
RHH5287_R3659
55.9
Non-Vd2 gdTCR nTPM: 193.6
Samples: 4
Max nTPM: 264.5
Min nTPM: 133.2
RHH5235_R3607
222.1
RHH5264_R3636
133.2
RHH5207_R3578
264.5
RHH5299_R3665
154.6
T-reg nTPM: 34.9
Samples: 4
Max nTPM: 39.2
Min nTPM: 28.4
RHH5301_R3667
28.4
RHH5237_R3609
39.2
RHH5266_R3638
33.1
RHH5209_R3580
38.8
Terminal effector memory CD4 T-cell nTPM: 163.3
Samples: 2
Max nTPM: 222.3
Min nTPM: 104.3
RHH5243_R3615
222.3
RHH5272_R3644
104.3
Terminal effector memory CD8 T-cell nTPM: 137.0
Samples: 4
Max nTPM: 173.3
Min nTPM: 107.0
RHH5232_R3604
173.3
RHH5204_R3575
139.0
RHH5261_R3633
128.8
RHH5296_R3662
107.0
Vd2 gdTCR nTPM: 91.3
Samples: 4
Max nTPM: 109.2
Min nTPM: 64.5
RHH5234_R3606
109.2
RHH5206_R3577
97.3
RHH5263_R3635
94.0
RHH5298_R3664
64.5
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
