MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:88.2 nTPM
HPA Brain:283.8 nTPM
GTEx:88.2 nTPM
FANTOM5:142.4 Scaled Tags Per Million
Pig:180.0 nTPM
Mouse:126.4 nTPM
Allen mouse:10.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 283.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 245.1
2586 Male, age 75, left hemisphere 326.4
2666 Male, age 74, left hemisphere 280.0
2219 Male, age 76, both hemispheres 249.5
1870 Female, age 42, unknown 241.0
1833 Male, age 53, unknown 240.6
1827 Male, age 72, unknown 230.2
1830 Male, age 51, unknown 228.2
2828 Female, age 72, unknown 227.8
2411 Female, age 72, unknown 220.6
2019 Male, age 18, unknown 207.0
Dorsal raphe nucleus
nTPM: 265.4
2047 Male, age 72, unknown 333.2
1828 Male, age 53, unknown 285.0
2750 Male, age 76, both hemispheres 239.0
2298 Female, age 72, unknown 235.1
2016 Female, age 72, unknown 234.8
Inferior colliculus
nTPM: 257.3
2849 Male, age 72, unknown 287.0
1848 Female, age 42, unknown 273.6
1890 Male, age 53, unknown 243.4
2097 Female, age 72, unknown 225.0
Median raphe nucleus
nTPM: 269.6
2220 Male, age 76, midline 269.6
Periaquaductal grey, anterior
nTPM: 267.1
1947 Male, age 18, unknown 295.9
2502 Female, age 75, unknown 261.8
1795 Male, age 51, unknown 243.6
Periaquaductal grey, dorsal
nTPM: 213.7
1840 Male, age 53, unknown 255.7
1831 Male, age 72, unknown 204.0
2850 Male, age 76, both hemispheres 198.7
2464 Female, age 72, unknown 196.2
Periaquaductal grey, lateral
nTPM: 194.5
2053 Male, age 18, unknown 209.1
2140 Male, age 76, both hemispheres 198.6
2272 Male, age 74, both hemispheres 175.9
Pretectal area
nTPM: 201.1
2825 Male, age 18, unknown 254.0
2667 Female, age 75, unknown 236.4
2224 Female, age 72, unknown 231.0
2407 Male, age 75, both hemispheres 221.2
2316 Male, age 76, right hemisphere 211.9
2007 Male, age 72, unknown 196.6
1817 Female, age 42, unknown 180.3
1816 Male, age 51, unknown 175.5
1944 Female, age 72, unknown 174.5
1815 Male, age 53, unknown 170.0
2273 Male, age 74, both hemispheres 160.4
Red nucleus
nTPM: 240.5
2584 Male, age 75, left hemisphere 276.4
2769 Male, age 72, unknown 264.9
2823 Male, age 76, right hemisphere 259.1
2227 Male, age 72, unknown 254.0
1821 Female, age 72, unknown 249.3
2588 Male, age 74, left hemisphere 244.2
2725 Female, age 75, unknown 240.4
1954 Female, age 42, unknown 230.9
1904 Male, age 53, unknown 226.3
2503 Female, age 72, unknown 226.1
1865 Male, age 51, unknown 225.8
2785 Male, age 18, unknown 188.5
Substantia nigra
nTPM: 283.8
1916 Female, age 42, unknown 393.7
2665 Male, age 74, both hemispheres 312.8
2699 Male, age 18, unknown 302.6
1851 Male, age 51, unknown 297.3
1941 Male, age 53, unknown 295.9
2583 Male, age 75, right hemisphere 276.9
2241 Male, age 72, unknown 266.7
2409 Female, age 72, unknown 243.7
2590 Female, age 75, unknown 224.5
1889 Female, age 72, unknown 224.2
Superior colliculus
nTPM: 206.6
1895 Male, age 76, right hemisphere 264.2
1839 Male, age 51, unknown 258.3
2664 Male, age 75, both hemispheres 257.2
1796 Male, age 53, unknown 224.4
2668 Female, age 75, unknown 214.8
2587 Male, age 74, left hemisphere 204.3
2261 Male, age 18, unknown 182.3
2087 Female, age 72, unknown 166.0
1913 Female, age 42, unknown 153.1
1995 Male, age 72, unknown 141.4
Ventral tegmental area
nTPM: 271.6
1915 Female, age 42, unknown 315.0
1942 Male, age 51, unknown 278.9
2218 Male, age 76, both hemispheres 274.8
2410 Female, age 72, unknown 271.9
2223 Female, age 72, unknown 256.9
2021 Male, age 53, unknown 232.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 88.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 88.2
Samples: 139

Max nTPM: 202.2
Min nTPM: 32.7
Std nTPM: 33.6
Median nTPM: 81.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 202.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 194.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 178.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 175.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 148.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 148.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 147.5
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 147.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 147.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 144.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 142.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 142.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 142.4
FF:10158-103A5 76 years, female 142.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 180.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 169.2
Samples: 4

Max nTPM: 229.3
Min nTPM: 115.8
Sample A Female 210.1
Sample B Female 115.8
Sample C Male 229.3
Sample D Male 121.7
Midbrain
nTPM: 165.5
Samples: 4

Max nTPM: 213.4
Min nTPM: 122.9
Sample A Female 122.9
Sample B Female 148.2
Sample C Male 213.4
Sample D Male 177.6
Periaqueductal gray
nTPM: 126.1
Samples: 3

Max nTPM: 138.4
Min nTPM: 108.3
Sample B Female 131.7
Sample C Male 138.4
Sample D Male 108.3
Superior colliculi
nTPM: 180.0
Samples: 4

Max nTPM: 228.4
Min nTPM: 102.4
Sample A Female 179.1
Sample B Female 102.4
Sample C Male 228.4
Sample D Male 210.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 126.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 126.4
Samples: 4

Max nTPM: 129.3
Min nTPM: 122.1
Sample A Male 122.1
Sample B Male 125.1
Sample C Female 129.0
Sample D Female 129.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.0
74047777 Antisense, RP_051214_02_A02, Mouse strain C57BL/6J (56 days, male) 17.3
68203494 Antisense, RP_041208_01_D02, Mouse strain C57BL/6J (56 days, male) 12.6
70795892 Antisense, RP_050712_02_B09, Mouse strain C57BL/6J (56 days, male) 6.1
74750065 Antisense, RP_060220_05_F07, Mouse strain C57BL/6J (56 days, male) 4.0

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