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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
631.2
nTPM
HPA Brain:
359.8
nTPM
GTEx:
631.2
nTPM
FANTOM5:
556.5
Scaled Tags Per Million
Pig:
204.5
nTPM
Mouse:
155.9
nTPM
Allen mouse:
8.8
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
359.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 258.4
2411
Female, age 72, unknown
362.1
1870
Female, age 42, unknown
340.6
1833
Male, age 53, unknown
295.0
1827
Male, age 72, unknown
284.1
1830
Male, age 51, unknown
269.6
2019
Male, age 18, unknown
235.9
2219
Male, age 76, both hemispheres
230.0
2828
Female, age 72, unknown
229.0
2586
Male, age 75, left hemisphere
175.1
2666
Male, age 74, left hemisphere
162.2
Dorsal raphe nucleus nTPM: 358.2
2298
Female, age 72, unknown
484.8
2047
Male, age 72, unknown
376.5
2750
Male, age 76, both hemispheres
320.7
1828
Male, age 53, unknown
306.1
2016
Female, age 72, unknown
302.8
Inferior colliculus nTPM: 290.1
2097
Female, age 72, unknown
316.8
2849
Male, age 72, unknown
307.7
1848
Female, age 42, unknown
289.1
1890
Male, age 53, unknown
246.8
Median raphe nucleus nTPM: 346.2
2220
Male, age 76, midline
346.2
Periaquaductal grey, anterior nTPM: 288.0
1947
Male, age 18, unknown
316.5
1795
Male, age 51, unknown
278.0
2502
Female, age 75, unknown
269.5
Periaquaductal grey, dorsal nTPM: 318.1
2850
Male, age 76, both hemispheres
388.3
1840
Male, age 53, unknown
351.8
2464
Female, age 72, unknown
278.1
1831
Male, age 72, unknown
254.1
Periaquaductal grey, lateral nTPM: 359.8
2272
Male, age 74, both hemispheres
436.7
2140
Male, age 76, both hemispheres
326.2
2053
Male, age 18, unknown
316.6
Pretectal area nTPM: 300.9
2273
Male, age 74, both hemispheres
469.1
2224
Female, age 72, unknown
367.0
2667
Female, age 75, unknown
315.7
2825
Male, age 18, unknown
315.4
1817
Female, age 42, unknown
276.2
1944
Female, age 72, unknown
274.8
1815
Male, age 53, unknown
271.4
1816
Male, age 51, unknown
263.2
2007
Male, age 72, unknown
261.3
2407
Male, age 75, both hemispheres
252.2
2316
Male, age 76, right hemisphere
243.6
Red nucleus nTPM: 251.8
1821
Female, age 72, unknown
334.1
2725
Female, age 75, unknown
292.6
1954
Female, age 42, unknown
269.3
1865
Male, age 51, unknown
262.5
2503
Female, age 72, unknown
255.7
1904
Male, age 53, unknown
253.2
2227
Male, age 72, unknown
248.9
2769
Male, age 72, unknown
247.5
2823
Male, age 76, right hemisphere
241.9
2785
Male, age 18, unknown
238.3
2584
Male, age 75, left hemisphere
189.8
2588
Male, age 74, left hemisphere
188.2
Substantia nigra nTPM: 278.2
1916
Female, age 42, unknown
335.0
1941
Male, age 53, unknown
329.1
2241
Male, age 72, unknown
322.3
1889
Female, age 72, unknown
316.9
1851
Male, age 51, unknown
312.7
2699
Male, age 18, unknown
286.6
2409
Female, age 72, unknown
256.4
2590
Female, age 75, unknown
237.2
2583
Male, age 75, right hemisphere
199.2
2665
Male, age 74, both hemispheres
186.7
Superior colliculus nTPM: 270.2
2587
Male, age 74, left hemisphere
360.0
1895
Male, age 76, right hemisphere
291.3
1796
Male, age 53, unknown
284.3
1913
Female, age 42, unknown
275.1
1839
Male, age 51, unknown
274.5
2261
Male, age 18, unknown
270.4
2668
Female, age 75, unknown
261.2
1995
Male, age 72, unknown
246.4
2087
Female, age 72, unknown
230.0
2664
Male, age 75, both hemispheres
209.1
Ventral tegmental area nTPM: 306.9
2410
Female, age 72, unknown
350.7
2223
Female, age 72, unknown
341.1
2218
Male, age 76, both hemispheres
312.1
1915
Female, age 42, unknown
311.9
1942
Male, age 51, unknown
265.6
2021
Male, age 53, unknown
259.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
631.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 631.2
Samples: 139
Max nTPM: 1609.5
Min nTPM: 250.9
Std nTPM: 207.2
Median nTPM: 585.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
1609.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
1432.2
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
1389.2
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
1292.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
1249.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
1200.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
1090.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
1038.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
1015.2
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
887.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
870.7
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
864.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
863.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
841.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
837.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
828.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
814.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
782.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
776.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
771.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
769.5
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
757.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
745.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
745.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
743.2
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
734.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
732.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
725.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
719.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
708.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
702.7
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
697.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
695.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
684.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
681.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
681.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
676.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
664.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
658.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
655.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
653.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
652.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
650.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
647.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
646.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
645.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
644.7
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
637.4
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
633.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
627.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
624.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
622.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
622.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
621.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
619.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
618.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
614.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
612.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
610.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
609.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
606.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
606.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
605.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
599.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
596.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
592.9
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
591.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
591.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
586.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
585.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
584.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
582.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
580.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
579.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
579.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
575.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
575.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
572.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
571.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
569.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
568.1
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
567.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
561.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
561.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
559.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
559.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
559.1
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
558.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
556.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
554.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
553.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
552.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
552.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
539.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
539.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
538.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
534.6
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
533.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
533.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
532.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
529.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
528.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
526.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
525.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
522.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
522.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
516.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
507.5
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
504.7
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
497.9
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
492.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
490.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
490.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
487.3
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
479.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
477.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
474.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
470.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
469.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
462.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
462.5
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
460.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
459.4
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
455.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
451.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
438.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
437.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
437.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
425.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
419.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
412.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
403.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
401.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
400.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
373.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
365.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
360.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
346.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
250.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
155.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 155.9
Samples: 4
Max nTPM: 162.0
Min nTPM: 148.5
Sample A
Male
154.0
Sample B
Male
159.2
Sample C
Female
148.5
Sample D
Female
162.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.