MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.3 nTPM
HPA Brain:40.7 nTPM
GTEx:29.3 nTPM
FANTOM5:58.8 Scaled Tags Per Million
Pig:0.8 nTPM
Mouse:111.7 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.3
2586 Male, age 75, left hemisphere 43.3
2828 Female, age 72, unknown 42.8
2411 Female, age 72, unknown 42.1
1827 Male, age 72, unknown 39.7
1870 Female, age 42, unknown 38.4
1830 Male, age 51, unknown 36.0
2019 Male, age 18, unknown 36.0
1833 Male, age 53, unknown 35.0
2219 Male, age 76, both hemispheres 30.9
2666 Male, age 74, left hemisphere 28.9
Dorsal raphe nucleus
nTPM: 39.2
2298 Female, age 72, unknown 46.5
2016 Female, age 72, unknown 42.9
2750 Male, age 76, both hemispheres 37.1
1828 Male, age 53, unknown 36.8
2047 Male, age 72, unknown 32.9
Inferior colliculus
nTPM: 40.7
2097 Female, age 72, unknown 47.9
1890 Male, age 53, unknown 42.0
1848 Female, age 42, unknown 36.5
2849 Male, age 72, unknown 36.3
Median raphe nucleus
nTPM: 33.8
2220 Male, age 76, midline 33.8
Periaquaductal grey, anterior
nTPM: 37.0
2502 Female, age 75, unknown 42.2
1795 Male, age 51, unknown 36.2
1947 Male, age 18, unknown 32.6
Periaquaductal grey, dorsal
nTPM: 39.1
1840 Male, age 53, unknown 46.7
1831 Male, age 72, unknown 37.5
2464 Female, age 72, unknown 36.7
2850 Male, age 76, both hemispheres 35.5
Periaquaductal grey, lateral
nTPM: 38.5
2272 Male, age 74, both hemispheres 39.3
2053 Male, age 18, unknown 39.1
2140 Male, age 76, both hemispheres 37.2
Pretectal area
nTPM: 36.6
1817 Female, age 42, unknown 40.3
2273 Male, age 74, both hemispheres 40.1
2224 Female, age 72, unknown 39.7
1944 Female, age 72, unknown 38.7
2316 Male, age 76, right hemisphere 37.7
1816 Male, age 51, unknown 36.4
2007 Male, age 72, unknown 35.4
1815 Male, age 53, unknown 34.5
2407 Male, age 75, both hemispheres 34.2
2667 Female, age 75, unknown 33.3
2825 Male, age 18, unknown 32.8
Red nucleus
nTPM: 39.6
1865 Male, age 51, unknown 44.2
2227 Male, age 72, unknown 43.0
2769 Male, age 72, unknown 42.7
1904 Male, age 53, unknown 42.3
2503 Female, age 72, unknown 42.1
2823 Male, age 76, right hemisphere 40.1
1954 Female, age 42, unknown 39.9
2785 Male, age 18, unknown 39.7
2725 Female, age 75, unknown 38.4
1821 Female, age 72, unknown 35.6
2584 Male, age 75, left hemisphere 35.3
2588 Male, age 74, left hemisphere 31.6
Substantia nigra
nTPM: 40.4
2409 Female, age 72, unknown 53.5
2699 Male, age 18, unknown 48.0
2590 Female, age 75, unknown 41.0
1851 Male, age 51, unknown 40.6
1916 Female, age 42, unknown 40.4
2583 Male, age 75, right hemisphere 40.1
2241 Male, age 72, unknown 38.4
1889 Female, age 72, unknown 36.4
2665 Male, age 74, both hemispheres 34.8
1941 Male, age 53, unknown 31.0
Superior colliculus
nTPM: 36.9
1995 Male, age 72, unknown 42.4
1796 Male, age 53, unknown 40.2
1913 Female, age 42, unknown 39.8
2261 Male, age 18, unknown 38.7
2664 Male, age 75, both hemispheres 36.6
2087 Female, age 72, unknown 36.3
2587 Male, age 74, left hemisphere 35.6
1839 Male, age 51, unknown 35.3
2668 Female, age 75, unknown 35.1
1895 Male, age 76, right hemisphere 29.0
Ventral tegmental area
nTPM: 38.7
1915 Female, age 42, unknown 40.6
2021 Male, age 53, unknown 40.2
2223 Female, age 72, unknown 39.6
2410 Female, age 72, unknown 38.7
1942 Male, age 51, unknown 37.1
2218 Male, age 76, both hemispheres 35.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.3
Samples: 139

Max nTPM: 58.5
Min nTPM: 11.0
Std nTPM: 8.2
Median nTPM: 28.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 58.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 50.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 48.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 47.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 46.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 45.4
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 43.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 43.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 42.5
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 42.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 41.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.8
FF:10158-103A5 76 years, female 58.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 0.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.5
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 1.0
Sample C Male 0.3
Sample D Male 0.3
Midbrain
nTPM: 0.3
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 0.3
Sample C Male 0.3
Sample D Male 0.3
Periaqueductal gray
nTPM: 0.8
Samples: 3

Max nTPM: 1.2
Min nTPM: 0.6
Sample B Female 0.6
Sample C Male 0.7
Sample D Male 1.2
Superior colliculi
nTPM: 0.3
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.3
Sample C Male 0.1
Sample D Male 0.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 111.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 111.7
Samples: 4

Max nTPM: 116.5
Min nTPM: 106.3
Sample A Male 116.5
Sample B Male 112.5
Sample C Female 111.5
Sample D Female 106.3

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