HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:18.8 nTPM
HPA Brain:29.6 nTPM
GTEx:18.8 nTPM
FANTOM5:33.0 Scaled Tags Per Million
Pig:13.2 nTPM
Mouse:4.7 nTPM
Allen mouse:0.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA034968Antibody HPA042013Antibody HPA044141
Glial cells LowLowMedium
Neuronal cells MediumLowMedium







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 29.6
Sample id Sample description nTPM
Hippocampus
nTPM: 22.0
1911 Female, age 85, right hemisphere 27.6
2529 Female, age 94, left hemisphere 27.1
2621 Female, age 67, right hemisphere 20.8
1855 Male, age 76, left hemisphere 19.8
1898 Male, age 80, left hemisphere 18.6
2148 Female, age 91, left hemisphere 17.8
Dentate gyrus
nTPM: 22.6
2530 Female, age 94, left hemisphere 31.5
2010 Male, age 76, both hemispheres 26.6
2246 Female, age 85, both hemispheres 22.2
2528 Male, age 74, both hemispheres 22.1
2531 Female, age 67, both hemispheres 19.7
1927 Female, age 91, both hemispheres 13.5
Entorhinal gyrus
nTPM: 23.3
2117 Female, age 91, right hemisphere 30.2
2764 Male, age 80, right hemisphere 26.4
2613 Female, age 94, left hemisphere 22.4
1787 Male, age 76, left hemisphere 21.0
2686 Male, age 75, right hemisphere 20.8
1938 Female, age 85, left hemisphere 19.2
Hippocampus, CA1
nTPM: 20.6
2082 Female, age 91, right hemisphere 27.2
2527 Male, age 74, both hemispheres 21.9
1873 Female, age 85, both hemispheres 20.3
2045 Male, age 76, both hemispheres 17.4
2749 Male, age 80, left hemisphere 16.3
Hippocampus, CA2
nTPM: 23.0
2113 Female, age 91, right hemisphere 26.5
2249 Male, age 74, both hemispheres 24.9
2437 Female, age 94, left hemisphere 24.6
1940 Female, age 85, left hemisphere 23.4
1963 Male, age 80, left hemisphere 23.4
1892 Male, age 76, both hemispheres 14.9
Hippocampus, CA3
nTPM: 18.5
1891 Female, age 85, both hemispheres 29.5
1867 Male, age 76, both hemispheres 18.9
2137 Male, age 80, left hemisphere 18.5
2436 Male, age 74, both hemispheres 16.7
2861 Female, age 67, both hemispheres 14.0
2620 Female, age 94, left hemisphere 13.2
Parahippocampal cortex
nTPM: 22.6
2532 Female, age 72, left hemisphere 29.8
2018 Male, age 76, both hemispheres 27.4
1990 Female, age 91, right hemisphere 24.7
2692 Male, age 74, both hemispheres 24.3
1933 Female, age 85, both hemispheres 22.2
1850 Male, age 80, both hemispheres 21.5
2693 Female, age 94, both hemispheres 21.0
2245 Female, age 91, both hemispheres 20.0
2250 Female, age 67, right hemisphere 18.6
2622 Female, age 67, right hemisphere 16.8
Perirhinal gyrus
nTPM: 20.2
2848 Male, age 76, right hemisphere 29.1
1841 Female, age 85, right hemisphere 20.4
2521 Female, age 94, right hemisphere 19.1
1794 Male, age 80, right hemisphere 18.2
1847 Female, age 91, left hemisphere 14.0
Subiculum
nTPM: 29.6
2042 Male, age 76, both hemispheres 39.6
1901 Male, age 80, both hemispheres 30.7
2438 Female, age 94, left hemisphere 29.3
1977 Female, age 85, both hemispheres 28.6
2729 Female, age 91, right hemisphere 27.2
2619 Male, age 74, both hemispheres 22.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 18.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 18.8
Samples: 197

Max nTPM: 71.9
Min nTPM: 3.7
Std nTPM: 12.7
Median nTPM: 15.0
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 71.9
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 71.7
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 68.8
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 67.5
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 58.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 57.0
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 50.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 47.9
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 47.6
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 45.5
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 44.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 33.0
FF:10153-102I9 76 years, female 49.4
FF:10169-103B7 60 years, female 16.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 13.2
Pig sample Sample description nTPM
Subiculum
nTPM: 12.1
Samples: 4

Max nTPM: 13.3
Min nTPM: 10.9
Sample A Female 10.9
Sample B Female 13.3
Sample C Male 11.8
Sample D Male 12.4
Dorsal hippocampus
nTPM: 13.2
Samples: 4

Max nTPM: 15.7
Min nTPM: 11.5
Sample A Female 13.4
Sample B Female 12.2
Sample C Male 15.7
Sample D Male 11.5
Entorhinal cortex
nTPM: 12.2
Samples: 4

Max nTPM: 13.2
Min nTPM: 11.7
Sample A Female 11.7
Sample B Female 11.7
Sample C Male 12.0
Sample D Male 13.2
Ventral hippocampus
nTPM: 12.7
Samples: 4

Max nTPM: 13.6
Min nTPM: 11.5
Sample A Female 13.4
Sample B Female 12.2
Sample C Male 11.5
Sample D Male 13.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 4.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 4.7
Samples: 4

Max nTPM: 5.1
Min nTPM: 4.4
Sample A Male 4.4
Sample B Male 4.5
Sample C Female 4.8
Sample D Female 5.1
Hippocampal formation
nTPM: 4.6
Samples: 4

Max nTPM: 5.0
Min nTPM: 4.4
Sample A Male 4.4
Sample B Male 4.5
Sample C Female 4.6
Sample D Female 5.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.5
81600560 Antisense, RP_080619_04_E07, Mouse strain C57BL/6J (56 days, male) 0.9
75551477 Antisense, RP_060523_02_C02, Mouse strain C57BL/6J (56 days, male) 0.3
71280580 Antisense, RP_050818_01_B10, Mouse strain C57BL/6J (56 days, male) 0.2

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