MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.0 nTPM
HPA Brain:41.2 nTPM
GTEx:39.0 nTPM
FANTOM5:138.9 Scaled Tags Per Million
Pig:14.9 nTPM
Mouse:88.4 nTPM
Allen mouse:11.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.0
2411 Female, age 72, unknown 48.1
1870 Female, age 42, unknown 41.5
2019 Male, age 18, unknown 39.2
1830 Male, age 51, unknown 36.8
1827 Male, age 72, unknown 36.0
2586 Male, age 75, left hemisphere 35.1
1833 Male, age 53, unknown 34.5
2219 Male, age 76, both hemispheres 32.0
2828 Female, age 72, unknown 31.4
2666 Male, age 74, left hemisphere 25.1
Dorsal raphe nucleus
nTPM: 36.9
2750 Male, age 76, both hemispheres 47.0
2298 Female, age 72, unknown 39.7
2047 Male, age 72, unknown 34.4
2016 Female, age 72, unknown 32.1
1828 Male, age 53, unknown 31.5
Inferior colliculus
nTPM: 31.7
2097 Female, age 72, unknown 33.0
1848 Female, age 42, unknown 31.8
2849 Male, age 72, unknown 31.5
1890 Male, age 53, unknown 30.7
Median raphe nucleus
nTPM: 35.8
2220 Male, age 76, midline 35.8
Periaquaductal grey, anterior
nTPM: 33.7
1947 Male, age 18, unknown 36.2
2502 Female, age 75, unknown 33.6
1795 Male, age 51, unknown 31.2
Periaquaductal grey, dorsal
nTPM: 29.1
2464 Female, age 72, unknown 34.0
1840 Male, age 53, unknown 29.5
1831 Male, age 72, unknown 27.8
2850 Male, age 76, both hemispheres 24.9
Periaquaductal grey, lateral
nTPM: 31.6
2272 Male, age 74, both hemispheres 40.5
2053 Male, age 18, unknown 28.8
2140 Male, age 76, both hemispheres 25.5
Pretectal area
nTPM: 31.2
1815 Male, age 53, unknown 36.0
2825 Male, age 18, unknown 34.4
2007 Male, age 72, unknown 34.3
1817 Female, age 42, unknown 33.8
2273 Male, age 74, both hemispheres 33.1
2316 Male, age 76, right hemisphere 31.3
2224 Female, age 72, unknown 31.0
2667 Female, age 75, unknown 30.3
1816 Male, age 51, unknown 29.5
1944 Female, age 72, unknown 25.8
2407 Male, age 75, both hemispheres 23.9
Red nucleus
nTPM: 41.2
2503 Female, age 72, unknown 49.4
1865 Male, age 51, unknown 46.5
1821 Female, age 72, unknown 45.9
1904 Male, age 53, unknown 44.7
2769 Male, age 72, unknown 43.8
1954 Female, age 42, unknown 42.6
2227 Male, age 72, unknown 41.0
2785 Male, age 18, unknown 39.8
2588 Male, age 74, left hemisphere 39.3
2725 Female, age 75, unknown 37.1
2823 Male, age 76, right hemisphere 35.5
2584 Male, age 75, left hemisphere 28.8
Substantia nigra
nTPM: 36.1
2409 Female, age 72, unknown 47.6
1851 Male, age 51, unknown 40.6
2590 Female, age 75, unknown 38.5
2583 Male, age 75, right hemisphere 37.4
1916 Female, age 42, unknown 37.3
1889 Female, age 72, unknown 36.8
1941 Male, age 53, unknown 36.4
2241 Male, age 72, unknown 30.5
2699 Male, age 18, unknown 29.3
2665 Male, age 74, both hemispheres 27.0
Superior colliculus
nTPM: 33.5
1913 Female, age 42, unknown 37.5
1895 Male, age 76, right hemisphere 37.0
2587 Male, age 74, left hemisphere 36.7
1995 Male, age 72, unknown 35.8
1796 Male, age 53, unknown 34.8
2668 Female, age 75, unknown 34.7
2261 Male, age 18, unknown 33.8
1839 Male, age 51, unknown 32.4
2087 Female, age 72, unknown 28.6
2664 Male, age 75, both hemispheres 23.5
Ventral tegmental area
nTPM: 35.7
2410 Female, age 72, unknown 44.7
2223 Female, age 72, unknown 39.3
2218 Male, age 76, both hemispheres 35.2
1915 Female, age 42, unknown 33.2
2021 Male, age 53, unknown 31.3
1942 Male, age 51, unknown 30.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.0
Samples: 139

Max nTPM: 89.4
Min nTPM: 17.0
Std nTPM: 12.9
Median nTPM: 37.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 89.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 79.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 76.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 76.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 73.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 70.7
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 61.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 60.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 59.6
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 59.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 58.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 138.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 138.9
FF:10158-103A5 76 years, female 138.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.9
Samples: 4

Max nTPM: 19.3
Min nTPM: 11.7
Sample A Female 19.3
Sample B Female 14.2
Sample C Male 14.3
Sample D Male 11.7
Midbrain
nTPM: 14.6
Samples: 4

Max nTPM: 17.1
Min nTPM: 12.9
Sample A Female 17.1
Sample B Female 12.9
Sample C Male 13.1
Sample D Male 15.2
Periaqueductal gray
nTPM: 13.8
Samples: 3

Max nTPM: 14.7
Min nTPM: 13.0
Sample B Female 14.7
Sample C Male 13.0
Sample D Male 13.8
Superior colliculi
nTPM: 14.1
Samples: 4

Max nTPM: 18.6
Min nTPM: 12.0
Sample A Female 18.6
Sample B Female 13.4
Sample C Male 12.5
Sample D Male 12.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 88.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 88.4
Samples: 4

Max nTPM: 93.1
Min nTPM: 84.6
Sample A Male 88.4
Sample B Male 87.5
Sample C Female 84.6
Sample D Female 93.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.8
69838210 Antisense, RP_050224_02_D04, Mouse strain C57BL/6J (56 days, male) 11.8

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