HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:39.5 nTPM
HPA Brain:38.0 nTPM
GTEx:39.5 nTPM
FANTOM5:56.8 Scaled Tags Per Million
Pig:18.2 nTPM
Mouse:108.7 nTPM
Allen mouse:14.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039457
Glial cells High
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 38.0
Sample id Sample description nTPM
Hippocampus
nTPM: 32.6
1855 Male, age 76, left hemisphere 40.8
1898 Male, age 80, left hemisphere 40.2
1911 Female, age 85, right hemisphere 30.5
2621 Female, age 67, right hemisphere 29.2
2148 Female, age 91, left hemisphere 27.8
2529 Female, age 94, left hemisphere 27.2
Dentate gyrus
nTPM: 34.8
2010 Male, age 76, both hemispheres 40.3
2530 Female, age 94, left hemisphere 38.9
2528 Male, age 74, both hemispheres 36.1
1927 Female, age 91, both hemispheres 33.2
2246 Female, age 85, both hemispheres 32.3
2531 Female, age 67, both hemispheres 28.0
Entorhinal gyrus
nTPM: 38.0
2764 Male, age 80, right hemisphere 43.5
1938 Female, age 85, left hemisphere 41.2
2613 Female, age 94, left hemisphere 39.4
2117 Female, age 91, right hemisphere 39.0
1787 Male, age 76, left hemisphere 38.6
2686 Male, age 75, right hemisphere 26.2
Hippocampus, CA1
nTPM: 36.8
2749 Male, age 80, left hemisphere 55.4
2045 Male, age 76, both hemispheres 34.8
1873 Female, age 85, both hemispheres 33.8
2527 Male, age 74, both hemispheres 32.7
2082 Female, age 91, right hemisphere 27.4
Hippocampus, CA2
nTPM: 36.3
1892 Male, age 76, both hemispheres 47.0
1963 Male, age 80, left hemisphere 46.9
2249 Male, age 74, both hemispheres 37.3
2437 Female, age 94, left hemisphere 30.3
2113 Female, age 91, right hemisphere 29.3
1940 Female, age 85, left hemisphere 27.2
Hippocampus, CA3
nTPM: 35.1
1867 Male, age 76, both hemispheres 46.0
2137 Male, age 80, left hemisphere 43.4
2436 Male, age 74, both hemispheres 36.2
1891 Female, age 85, both hemispheres 33.9
2620 Female, age 94, left hemisphere 33.3
2861 Female, age 67, both hemispheres 17.7
Parahippocampal cortex
nTPM: 31.4
1850 Male, age 80, both hemispheres 40.8
2018 Male, age 76, both hemispheres 37.8
1990 Female, age 91, right hemisphere 36.4
1933 Female, age 85, both hemispheres 35.6
2532 Female, age 72, left hemisphere 33.3
2245 Female, age 91, both hemispheres 31.4
2250 Female, age 67, right hemisphere 27.8
2693 Female, age 94, both hemispheres 27.0
2692 Male, age 74, both hemispheres 24.6
2622 Female, age 67, right hemisphere 19.3
Perirhinal gyrus
nTPM: 38.0
1794 Male, age 80, right hemisphere 42.9
1847 Female, age 91, left hemisphere 40.0
1841 Female, age 85, right hemisphere 38.9
2848 Male, age 76, right hemisphere 34.7
2521 Female, age 94, right hemisphere 33.6
Subiculum
nTPM: 33.9
1977 Female, age 85, both hemispheres 42.5
1901 Male, age 80, both hemispheres 39.2
2042 Male, age 76, both hemispheres 38.4
2438 Female, age 94, left hemisphere 28.2
2619 Male, age 74, both hemispheres 28.1
2729 Female, age 91, right hemisphere 27.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 39.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 39.5
Samples: 197

Max nTPM: 82.7
Min nTPM: 12.9
Std nTPM: 11.6
Median nTPM: 38.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 82.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 68.9
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 68.3
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 65.9
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 64.7
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 62.0
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 61.3
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 59.6
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 59.0
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 58.7
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 58.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 56.8
FF:10153-102I9 76 years, female 61.8
FF:10169-103B7 60 years, female 51.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 18.2
Pig sample Sample description nTPM
Subiculum
nTPM: 13.9
Samples: 4

Max nTPM: 16.2
Min nTPM: 12.9
Sample A Female 16.2
Sample B Female 13.4
Sample C Male 12.9
Sample D Male 13.2
Dorsal hippocampus
nTPM: 18.2
Samples: 4

Max nTPM: 22.9
Min nTPM: 14.4
Sample A Female 22.9
Sample B Female 19.4
Sample C Male 14.4
Sample D Male 16.1
Entorhinal cortex
nTPM: 13.4
Samples: 4

Max nTPM: 16.0
Min nTPM: 10.6
Sample A Female 16.0
Sample B Female 14.8
Sample C Male 12.2
Sample D Male 10.6
Ventral hippocampus
nTPM: 16.1
Samples: 4

Max nTPM: 18.8
Min nTPM: 13.5
Sample A Female 18.8
Sample B Female 13.5
Sample C Male 15.1
Sample D Male 16.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 108.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 108.7
Samples: 4

Max nTPM: 115.1
Min nTPM: 104.1
Sample A Male 104.1
Sample B Male 105.9
Sample C Female 109.6
Sample D Female 115.1
Hippocampal formation
nTPM: 100.6
Samples: 4

Max nTPM: 107.2
Min nTPM: 94.5
Sample A Male 107.2
Sample B Male 94.5
Sample C Female 98.3
Sample D Female 102.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 14.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 14.2
69838210 Antisense, RP_050224_02_D04, Mouse strain C57BL/6J (56 days, male) 14.2

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