HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:23.6 nTPM
HPA Brain:73.0 nTPM
GTEx:23.6 nTPM
FANTOM5:52.3 Scaled Tags Per Million
Pig:34.8 nTPM
Mouse:66.8 nTPM
Allen mouse:6.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA052825
Glial cells Not detected
Neuronal cells Not detected


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 73.0
Sample id Sample description nTPM
Hippocampus
nTPM: 59.3
1898 Male, age 80, left hemisphere 67.2
2148 Female, age 91, left hemisphere 63.1
1855 Male, age 76, left hemisphere 60.1
2621 Female, age 67, right hemisphere 59.6
2529 Female, age 94, left hemisphere 53.0
1911 Female, age 85, right hemisphere 52.7
Dentate gyrus
nTPM: 59.0
1927 Female, age 91, both hemispheres 64.6
2530 Female, age 94, left hemisphere 60.6
2528 Male, age 74, both hemispheres 60.0
2246 Female, age 85, both hemispheres 57.2
2531 Female, age 67, both hemispheres 56.2
2010 Male, age 76, both hemispheres 55.6
Entorhinal gyrus
nTPM: 67.9
1938 Female, age 85, left hemisphere 75.1
2613 Female, age 94, left hemisphere 72.0
1787 Male, age 76, left hemisphere 69.7
2764 Male, age 80, right hemisphere 69.7
2117 Female, age 91, right hemisphere 62.4
2686 Male, age 75, right hemisphere 58.8
Hippocampus, CA1
nTPM: 60.5
2749 Male, age 80, left hemisphere 77.0
2527 Male, age 74, both hemispheres 61.5
1873 Female, age 85, both hemispheres 59.4
2082 Female, age 91, right hemisphere 56.1
2045 Male, age 76, both hemispheres 48.8
Hippocampus, CA2
nTPM: 62.2
1892 Male, age 76, both hemispheres 70.3
2249 Male, age 74, both hemispheres 67.9
1963 Male, age 80, left hemisphere 66.3
2437 Female, age 94, left hemisphere 62.5
2113 Female, age 91, right hemisphere 55.0
1940 Female, age 85, left hemisphere 51.3
Hippocampus, CA3
nTPM: 73.0
2436 Male, age 74, both hemispheres 131.0
2137 Male, age 80, left hemisphere 66.7
2861 Female, age 67, both hemispheres 65.3
2620 Female, age 94, left hemisphere 63.5
1867 Male, age 76, both hemispheres 56.9
1891 Female, age 85, both hemispheres 54.7
Parahippocampal cortex
nTPM: 61.3
1850 Male, age 80, both hemispheres 72.1
1933 Female, age 85, both hemispheres 65.3
2693 Female, age 94, both hemispheres 64.4
1990 Female, age 91, right hemisphere 62.3
2692 Male, age 74, both hemispheres 61.9
2250 Female, age 67, right hemisphere 59.7
2532 Female, age 72, left hemisphere 59.6
2622 Female, age 67, right hemisphere 58.7
2245 Female, age 91, both hemispheres 57.1
2018 Male, age 76, both hemispheres 52.3
Perirhinal gyrus
nTPM: 70.2
2848 Male, age 76, right hemisphere 77.0
1847 Female, age 91, left hemisphere 73.0
1794 Male, age 80, right hemisphere 70.4
2521 Female, age 94, right hemisphere 66.4
1841 Female, age 85, right hemisphere 64.3
Subiculum
nTPM: 58.8
1977 Female, age 85, both hemispheres 65.0
2438 Female, age 94, left hemisphere 59.8
2619 Male, age 74, both hemispheres 59.4
2729 Female, age 91, right hemisphere 59.3
1901 Male, age 80, both hemispheres 58.4
2042 Male, age 76, both hemispheres 51.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 23.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 23.6
Samples: 197

Max nTPM: 35.5
Min nTPM: 6.4
Std nTPM: 4.2
Median nTPM: 24.2
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 35.5
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 33.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 33.0
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 31.2
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 31.0
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 30.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 30.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 30.4
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 30.1
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 30.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 29.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 52.3
FF:10153-102I9 76 years, female 52.8
FF:10169-103B7 60 years, female 51.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 34.8
Pig sample Sample description nTPM
Subiculum
nTPM: 32.8
Samples: 4

Max nTPM: 39.1
Min nTPM: 28.6
Sample A Female 39.1
Sample B Female 31.2
Sample C Male 32.3
Sample D Male 28.6
Dorsal hippocampus
nTPM: 31.8
Samples: 4

Max nTPM: 34.8
Min nTPM: 24.6
Sample A Female 34.8
Sample B Female 33.9
Sample C Male 33.8
Sample D Male 24.6
Entorhinal cortex
nTPM: 34.8
Samples: 4

Max nTPM: 37.6
Min nTPM: 31.2
Sample A Female 34.6
Sample B Female 37.6
Sample C Male 35.8
Sample D Male 31.2
Ventral hippocampus
nTPM: 31.9
Samples: 4

Max nTPM: 39.0
Min nTPM: 26.9
Sample A Female 30.1
Sample B Female 26.9
Sample C Male 39.0
Sample D Male 31.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 66.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 66.9
Samples: 4

Max nTPM: 78.3
Min nTPM: 59.8
Sample A Male 59.8
Sample B Male 65.5
Sample C Female 63.8
Sample D Female 78.3
Hippocampal formation
nTPM: 45.8
Samples: 4

Max nTPM: 50.1
Min nTPM: 40.0
Sample A Male 40.0
Sample B Male 47.3
Sample C Female 50.1
Sample D Female 45.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.1
68797840 Antisense, RP_050215_01_C04, Mouse strain C57BL/6J (56 days, male) 6.1

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