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RPLP0
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  • SUMMARY

  • TISSUE

  • BRAIN

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  • TISSUE CELL

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  • RPLP0
PATHOLOGY STOMACH CANCER Show tissue menu
BREAST CANCER CARCINOID CERVICAL CANCER COLORECTAL CANCER ENDOMETRIAL CANCER GLIOMA HEAD AND NECK CANCER LIVER CANCER LUNG CANCER LYMPHOMA
MELANOMA OVARIAN CANCER PANCREATIC CANCER PROSTATE CANCER RENAL CANCER SKIN CANCER STOMACH CANCER TESTIS CANCER THYROID CANCER UROTHELIAL CANCER
ANTIBODIES
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VALIDATION
Dictionary
Stomach cancer
Human pathology
Stomach cancer
STOMACH CANCER - Interactive survival scatter ploti

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisi

Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.

RPLP0 is not prognostic in stomach cancer


Stage:


Survival analysis
Current cut offi

Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.

:
Best expression cut offi

Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .

When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.

: 327.32
Median expressioni

Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.

: N/A
Median follow up timei

Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.

: N/A
P scorei

Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.

N/A
5-year survival highi

5-year survival for patients with higher expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
5-year survival lowi

5-year survival for patients with lower expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
TCGA RNA samplesi

RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.

Average FPKM 377.4
Number of samples 354
Samples
Sample Description FPKM
TCGA-D7-A74A-01A 61 years, female, white, stage:iiia, alive, 607 days 1094.0
TCGA-BR-8361-01A 71 years, female, white, stage:iiic, alive, 946 days 986.4
TCGA-BR-8372-01A 63 years, male, white, stage:iiic, alive, 951 days 938.1
TCGA-IN-7806-01A 50 years, male, white, stage:iib, alive, 1106 days 914.7
TCGA-BR-7717-01A 63 years, male, white, stage:iv, dead, 552 days 898.6
TCGA-BR-8487-01A 64 years, female, white, stage:iia, alive, 34 days 865.2
TCGA-VQ-A91D-01A 70 years, male, white, stage:iiic, dead, 356 days 862.8
TCGA-D7-6525-01A 58 years, male, white, stage:iiia, dead, 406 days 843.3
TCGA-D7-A6EX-01A 72 years, female, white, stage:iiia, alive, 86 days 806.9
TCGA-VQ-A8PH-01A 62 years, male, white, stage:iiib, dead, 389 days 785.5
TCGA-BR-8589-01A 56 years, male, white, stage:iiib, alive, 825 days 776.8
TCGA-CG-5726-01A 73 years, male, stage:ia, dead, 881 days 766.3
TCGA-CG-4444-01A 76 years, male, stage:iiia, alive, 1431 days 737.0
TCGA-HF-A5NB-01A 75 years, female, stage:iiic, alive, 928 days 732.1
TCGA-HU-A4H5-01A 71 years, male, asian, stage:ib, alive, 724 days 730.2
TCGA-HU-A4GT-01A 71 years, female, asian, stage:iia, alive, 198 days 725.2
TCGA-HU-A4G2-01A 46 years, male, asian, stage:iib, alive, 739 days 716.4
TCGA-BR-4280-01A 78 years, female, white, stage:iii, dead, 201 days 713.4
TCGA-CD-8531-01A 66 years, female, asian, stage:iiia, alive, 383 days 691.3
TCGA-D7-6527-01A 62 years, male, white, stage:ii, dead, 312 days 680.2
TCGA-R5-A7ZI-01A 44 years, female, white, stage:iv, alive, 2267 days 676.2
TCGA-BR-8381-01A 51 years, male, white, stage:iib, alive, 224 days 674.5
TCGA-HU-8604-01A 82 years, female, asian, stage:iia, alive, 694 days 673.1
TCGA-BR-6566-01A 64 years, female, white, stage:iia, alive, 997 days 658.9
TCGA-D7-5578-01A 80 years, male, white, stage:iiia, alive, 385 days 633.8
TCGA-HU-A4GQ-01A 71 years, male, asian, stage:iiic, dead, 3 days 624.4
TCGA-CG-4469-01A 70 years, male, stage:iv, dead, 215 days 623.9
TCGA-CG-5722-01A 67 years, female, stage:iv, alive, 30 days 621.0
TCGA-CG-5720-01A 71 years, male, stage:ib, dead, 30 days 605.8
TCGA-BR-7707-01A 69 years, female, white, stage:ib, alive, 1090 days 595.7
TCGA-CD-5813-01A 60 years, male, asian, stage:ii, dead, 377 days 592.9
TCGA-CD-8528-01A 43 years, female, asian, stage:iiia, alive, 375 days 591.6
TCGA-KB-A6F7-01A 54 years, female, stage:ib, alive, 1935 days 584.7
TCGA-CD-8534-01A 41 years, male, asian, stage:ii, alive, 367 days 583.8
TCGA-BR-6455-01A 59 years, male, white, stage:iib, dead, 422 days 582.4
TCGA-BR-6707-01A 75 years, male, white, stage:iia, alive, 605 days 575.4
TCGA-BR-8077-01A 58 years, female, white, stage:iiib, alive, 21 days 572.0
TCGA-VQ-A8E2-01A 57 years, male, asian, stage:iiib, alive, 1319 days 565.0
TCGA-R5-A7ZR-01A 70 years, female, black or african american, stage:iii, dead, 185 days 560.0
TCGA-B7-A5TI-01A 52 years, male, white, stage:iiic, alive, 595 days 557.7
TCGA-BR-A4QL-01A 75 years, female, white, stage:iiib, dead, 491 days 549.3
TCGA-RD-A7BT-01A 66 years, male, native hawaiian or other pacific islander, stage:iv, dead, 262 days 549.2
TCGA-BR-6453-01A 54 years, male, white, stage:iia, alive, 485 days 547.3
TCGA-CG-5724-01A 59 years, male, stage:iv, dead, 366 days 546.4
TCGA-CG-4437-01A 83 years, male, stage:ii, alive, 245 days 545.2
TCGA-BR-8059-01A 72 years, male, white, stage:iii, dead, 439 days 540.5
TCGA-F1-6177-01A 90 years, male, black or african american, stage:i, dead, 200 days 535.4
TCGA-VQ-A8PU-01A 72 years, female, white, stage:iiia, dead, 832 days 530.1
TCGA-RD-A7C1-01A 82 years, male, white, stage:ib, dead, 507 days 530.1
TCGA-IN-A6RJ-01A 64 years, male, white, stage:ia, alive, 379 days 527.2
TCGA-VQ-A92D-01A 67 years, male, white, stage:ib, alive, 2032 days 525.8
TCGA-SW-A7EB-01A 45 years, male, white, stage:iiia, alive, 176 days 523.4
TCGA-IN-A6RN-01A 72 years, female, white, stage:iia, alive, 594 days 523.2
TCGA-F1-A72C-01A 68 years, male, asian, stage:iia, alive, 346 days 523.1
TCGA-R5-A7ZF-01A 65 years, female, black or african american, stage:iv, dead, 259 days 522.7
TCGA-HU-8244-01A 77 years, female, asian, stage:ia, alive, 742 days 521.6
TCGA-CG-5721-01A 58 years, male, stage:iv, alive, 183 days 520.8
TCGA-VQ-A8DU-01A 63 years, male, white, stage:iiia, dead, 166 days 510.6
TCGA-CD-8535-01A 59 years, male, asian, stage:iiia, alive, 390 days 509.6
TCGA-VQ-A8P2-01A 68 years, male, white, stage:iiia, alive, 1160 days 509.3
TCGA-BR-8081-01A 71 years, female, white, stage:iib, alive, 981 days 506.6
TCGA-CD-A4MG-01A 76 years, male, asian, stage:iia, dead, 200 days 503.4
TCGA-F1-6875-01A 80 years, male, black or african american, stage:ia, dead, 2197 days 501.4
TCGA-D7-A6EY-01A 72 years, female, white, stage:iiib, dead, 348 days 497.3
TCGA-BR-6563-01A 60 years, male, white, stage:iib, alive, 679 days 495.0
TCGA-VQ-A91S-01A 63 years, male, black or african american, stage:iiib, alive, 1000 days 492.8
TCGA-HU-A4GX-01A 70 years, female, asian, stage:iiic, alive, 616 days 487.0
TCGA-BR-8295-01A 60 years, female, white, stage:iib, dead, 67 days 486.7
TCGA-BR-4257-01A 79 years, female, white, dead, 294 days 484.5
TCGA-HU-8238-01A 56 years, male, asian, alive, 46 days 484.3
TCGA-B7-5818-01A 62 years, male, white, stage:ib, alive, 356 days 482.5
TCGA-BR-4279-01A 44 years, male, white, stage:ii, dead, 291 days 481.5
TCGA-MX-A5UJ-01A 86 years, female, white, stage:iiia, alive, 600 days 480.2
TCGA-BR-8676-01A 59 years, male, white, stage:iiib, alive, 229 days 477.0
TCGA-HF-7133-01A female, stage:iv, alive, 1918 days 476.3
TCGA-D7-6522-01A 58 years, male, white, stage:ib, alive, 566 days 475.0
TCGA-CG-5723-01A 83 years, male, stage:ii, alive, 3196 days 467.4
TCGA-VQ-A8E3-01A 79 years, male, white, stage:iia, dead, 661 days 466.6
TCGA-BR-8680-01A 45 years, male, asian, stage:iv, alive, 972 days 466.2
TCGA-D7-A4YX-01A 63 years, male, white, stage:iib, alive, 1108 days 464.6
TCGA-BR-4267-01A 51 years, male, white, stage:ib, dead, 188 days 463.8
TCGA-MX-A666-01A 61 years, male, white, stage:iia, alive, 427 days 463.2
TCGA-VQ-A8PE-01A 78 years, male, white, stage:iiib, dead, 675 days 462.4
TCGA-CD-5799-01A 45 years, male, asian, stage:ii, alive, 396 days 461.2
TCGA-IN-A6RS-01A 76 years, male, white, stage:ia, alive, 383 days 460.2
TCGA-SW-A7EA-01A 61 years, female, white, stage:ib, alive, 579 days 459.4
TCGA-VQ-A91X-01A 74 years, male, white, stage:iiib, dead, 289 days 458.0
TCGA-D7-8573-01A 57 years, male, white, stage:iia, alive, 593 days 457.8
TCGA-HJ-7597-01A 71 years, female, white, stage:ib, dead, 805 days 457.1
TCGA-VQ-A8PB-01A 65 years, female, white, stage:ii, dead, 1043 days 456.2
TCGA-BR-A44U-01A 70 years, male, white, stage:iiib, dead, 422 days 454.7
TCGA-BR-8286-01A 49 years, male, white, stage:ii, alive, 895 days 454.4
TCGA-HU-A4H4-01A 53 years, female, asian, stage:iib, alive, 725 days 450.5
TCGA-VQ-A94T-01A 73 years, male, stage:iiib, dead, 342 days 450.1
TCGA-CG-4465-01A 69 years, female, stage:iv, dead, 274 days 449.9
TCGA-CG-4306-01A 90 years, male, stage:iv, dead, 31 days 449.4
TCGA-CD-5803-01A 78 years, female, asian, stage:ii, dead, 341 days 445.4
TCGA-VQ-A94U-01A 71 years, male, white, stage:iib, alive, 819 days 442.7
TCGA-B7-A5TJ-01A 74 years, male, white, stage:iib, alive, 335 days 441.9
TCGA-VQ-A928-01A 49 years, male, white, stage:iv, dead, 174 days 441.8
TCGA-CG-5732-01A 66 years, male, stage:iv, dead, 2100 days 441.5
TCGA-BR-8366-01A 80 years, female, white, stage:iia, alive, 29 days 437.4
TCGA-BR-4201-01A 66 years, female, white, dead, 940 days 436.1
TCGA-BR-7715-01A 65 years, male, white, stage:iia, alive, 1023 days 430.7
TCGA-BR-8682-01A 52 years, male, asian, stage:iib, alive, 991 days 428.6
TCGA-VQ-A8PO-01A 74 years, male, white, stage:iib, dead, 282 days 428.3
TCGA-BR-8289-01A 57 years, male, white, stage:iv, dead, 81 days 427.4
TCGA-CD-8530-01A 52 years, male, asian, stage:ii, alive, 377 days 426.9
TCGA-D7-6519-01A 64 years, female, white, alive, 625 days 426.3
TCGA-VQ-A94R-01A 63 years, male, white, dead, 1294 days 425.1
TCGA-VQ-A8DV-01A 48 years, male, white, stage:ib, dead, 403 days 423.0
TCGA-BR-6709-01A 57 years, female, white, stage:iiib, dead, 370 days 421.4
TCGA-VQ-A8DT-01A 43 years, male, stage:iiib, alive, 1484 days 420.5
TCGA-HU-A4G3-01A 54 years, male, asian, stage:iib, alive, 170 days 417.8
TCGA-VQ-A91Z-01A 67 years, female, white, stage:iiia, alive, 1690 days 417.3
TCGA-BR-4256-01A 80 years, male, white, dead, 284 days 414.1
TCGA-CG-5719-01A 54 years, female, stage:iv, alive, 31 days 412.8
TCGA-D7-6528-01A 70 years, female, white, stage:ib, alive, 463 days 411.2
TCGA-RD-A8N5-01A 78 years, male, white, stage:iiia, dead, 1747 days 409.3
TCGA-BR-7197-01A 69 years, male, white, stage:ii, alive, 280 days 407.7
TCGA-VQ-AA69-01A 35 years, male, white, stage:iiia, alive, 864 days 407.4
TCGA-HU-8249-01A 76 years, male, asian, stage:iiia, alive, 881 days 406.6
TCGA-D7-6815-01A 70 years, female, white, stage:iib, alive, 486 days 404.9
TCGA-HU-A4G9-01A 67 years, female, asian, stage:ia, alive, 736 days 403.0
TCGA-CD-A48C-01A 80 years, female, asian, stage:iib, dead, 353 days 402.2
TCGA-CD-A48A-01A 57 years, male, asian, stage:iia, alive, 378 days 401.9
TCGA-HU-8602-01A 58 years, female, asian, stage:iib, alive, 679 days 401.5
TCGA-BR-8368-01A 84 years, female, white, stage:ib, alive, 131 days 400.9
TCGA-HU-A4GF-01A 69 years, male, asian, stage:iia, alive, 785 days 400.9
TCGA-IN-7808-01A 59 years, male, white, dead, 105 days 400.3
TCGA-VQ-A8PJ-01A 53 years, male, stage:iv, dead, 82 days 400.2
TCGA-BR-8591-01A 79 years, male, white, stage:iiic, alive, 856 days 398.3
TCGA-D7-6526-01A 67 years, female, white, stage:iiia, alive, 523 days 397.7
TCGA-IN-A7NR-01A 64 years, female, white, stage:iv, alive, 198 days 397.4
TCGA-CD-8527-01A 72 years, female, asian, stage:ii, dead, 218 days 396.9
TCGA-BR-6803-01A 54 years, female, white, stage:iia, alive, 949 days 396.6
TCGA-IN-A7NU-01A 69 years, male, white, stage:iiib, alive, 356 days 392.5
TCGA-BR-7851-01A 74 years, male, white, stage:iib, dead, 574 days 391.5
TCGA-HU-A4GU-01A 74 years, male, asian, stage:iib, alive, 200 days 391.1
TCGA-D7-5577-01A 53 years, female, white, stage:iiia, dead, 782 days 391.0
TCGA-VQ-AA6J-01A 75 years, male, black or african american, stage:iiib, alive, 838 days 388.8
TCGA-VQ-A91N-01A 59 years, female, stage:iv, dead, 570 days 387.5
TCGA-BR-8058-01A 53 years, female, white, stage:iiib, alive, 1133 days 385.0
TCGA-CD-5798-01A 83 years, male, asian, stage:ii, alive, 408 days 384.0
TCGA-CD-5801-01A male, asian, stage:iiia, dead, 401 days 383.1
TCGA-CG-4441-01A 83 years, male, stage:iiia, dead, 426 days 381.8
TCGA-BR-7957-01A 50 years, female, white, stage:iv, dead, 276 days 381.5
TCGA-RD-A8N6-01A 78 years, female, white, stage:iiia, dead, 272 days 381.0
TCGA-B7-A5TN-01A 60 years, male, white, stage:iib, alive, 287 days 381.0
TCGA-VQ-A8PP-01A 76 years, male, stage:iv, dead, 712 days 378.4
TCGA-BR-7716-01A 62 years, female, white, stage:iib, alive, 1210 days 377.8
TCGA-CG-4440-01A 68 years, female, stage:iv, dead, 122 days 375.9
TCGA-CG-5718-01A 78 years, female, stage:ii, dead, 1095 days 375.7
TCGA-CD-8532-01A 52 years, male, asian, stage:ii, dead, 354 days 370.6
TCGA-CD-A4MH-01A 86 years, female, asian, stage:iia, alive, 371 days 369.4
TCGA-BR-A4PF-01A 72 years, male, white, stage:iiib, alive, 35 days 367.6
TCGA-VQ-A8DZ-01A 70 years, male, black or african american, stage:iv, dead, 396 days 364.5
TCGA-BR-A4J4-01A 39 years, male, asian, stage:iiib, alive, 16 days 362.6
TCGA-BR-8678-01A 76 years, male, white, stage:ib, alive, 754 days 361.8
TCGA-HU-A4GJ-01A 60 years, female, asian, stage:iiic, alive, 650 days 361.2
TCGA-VQ-AA6F-01A 58 years, male, white, stage:iib, alive, 1646 days 359.3
TCGA-CD-8533-01A 48 years, male, asian, stage:ii, alive, 468 days 358.9
TCGA-VQ-A8E7-01B 59 years, male, white, stage:iv, alive, 1138 days 358.1
TCGA-HU-A4GC-01A 74 years, male, asian, stage:iiib, alive, 99 days 357.5
TCGA-BR-6801-01A 70 years, male, white, stage:iia, alive, 1223 days 355.1
TCGA-CG-4438-01A 56 years, male, stage:iv, alive, 1645 days 351.4
TCGA-BR-6457-01A 69 years, male, white, stage:iia, alive, 416 days 351.3
TCGA-HU-A4H8-01A 77 years, male, asian, stage:ib, alive, 428 days 350.7
TCGA-BR-4187-01A 56 years, male, white, dead, 141 days 350.3
TCGA-RD-A8N9-01A 63 years, female, asian, stage:ii, alive, 1083 days 349.2
TCGA-BR-6705-01A 68 years, female, white, stage:iiib, dead, 779 days 349.1
TCGA-CD-A487-01A 51 years, male, asian, stage:iib, alive, 374 days 347.2
TCGA-HF-7134-01A male, stage:ia, alive, 1588 days 346.4
TCGA-BR-7959-01A 59 years, male, white, stage:iiia, alive, 1010 days 345.0
TCGA-CD-A486-01A 68 years, male, asian, stage:iia, dead, 192 days 343.6
TCGA-BR-8588-01A 55 years, female, white, stage:iib, alive, 389 days 342.3
TCGA-D7-A6F0-01A 79 years, female, white, stage:ib, alive, 678 days 340.6
TCGA-BR-A4CS-01A 77 years, male, white, stage:iiic, dead, 45 days 339.2
TCGA-BR-7196-01A 64 years, male, white, stage:iv, alive, 666 days 338.0
TCGA-D7-8575-01A 75 years, male, white, stage:iiia, dead, 554 days 337.4
TCGA-VQ-A924-01A 69 years, male, stage:ii, dead, 1686 days 337.4
TCGA-RD-A7BS-01A 46 years, male, white, stage:iiia, dead, 336 days 337.0
TCGA-HF-7132-01A male, stage:ii, alive, 2351 days 336.3
TCGA-VQ-A94O-01A 74 years, male, black or african american, stage:iiic, dead, 640 days 334.6
TCGA-VQ-A8P5-01A 67 years, male, white, stage:iia, dead, 235 days 334.1
TCGA-IN-AB1X-01A 78 years, female, white, stage:iia, alive, 411 days 333.7
TCGA-D7-6521-01A 65 years, male, white, alive, 564 days 333.7
TCGA-CG-4305-01A 69 years, male, stage:ii, alive, 485 days 330.7
TCGA-IN-AB1V-01A 63 years, male, white, stage:ia, alive, 479 days 330.1
TCGA-HU-A4GP-01A 62 years, female, asian, stage:iia, alive, 273 days 329.8
TCGA-CG-4477-01A 58 years, female, stage:ib, alive, 942 days 328.1
TCGA-IN-A6RR-01A 84 years, male, white, dead, 205 days 326.5
TCGA-BR-4191-01A 72 years, male, white, dead, 558 days 324.4
TCGA-CG-4466-01A 81 years, female, stage:ib, alive, 577 days 324.3
TCGA-RD-A8MW-01A 72 years, male, white, stage:iiib, dead, 1153 days 323.5
TCGA-BR-8284-01A 72 years, female, white, stage:iiic, dead, 245 days 323.3
TCGA-VQ-A925-01A 66 years, male, white, stage:iiia, dead, 138 days 321.3
TCGA-HU-A4GD-01A 56 years, male, asian, stage:iib, alive, 692 days 319.9
TCGA-VQ-A91A-01A 67 years, male, white, stage:iiib, alive, 1200 days 319.4
TCGA-D7-A6EV-01A 71 years, female, white, stage:iib, alive, 342 days 319.4
TCGA-FP-A8CX-01A 60 years, male, white, stage:iiic, alive, 7 days 318.5
TCGA-HU-A4HB-01A 68 years, male, asian, stage:iib, dead, 477 days 318.3
TCGA-BR-7723-01A 59 years, male, white, stage:iiib, dead, 874 days 317.4
TCGA-R5-A7ZE-01B 66 years, female, white, stage:iiia, dead, 554 days 317.3
TCGA-VQ-A8PQ-01A 50 years, female, white, stage:iv, dead, 476 days 314.1
TCGA-F1-6874-01A 79 years, male, white, stage:ib, alive, 440 days 312.7
TCGA-CG-4460-01A 66 years, female, stage:iv, dead, 669 days 311.9
TCGA-D7-8572-01A 57 years, male, white, stage:iib, alive, 511 days 310.6
TCGA-BR-6452-01A 78 years, female, white, stage:iia, alive, 1055 days 308.9
TCGA-IN-A6RI-01A 45 years, male, white, stage:i, alive, 559 days 308.1
TCGA-BR-8677-01A 74 years, female, white, stage:iiib, alive, 813 days 307.1
TCGA-BR-A4J8-01A 71 years, female, white, stage:iiib, alive, 411 days 306.7
TCGA-KB-A93H-01A 79 years, female, asian, stage:iib, alive, 1145 days 305.8
TCGA-CG-5725-01A 72 years, male, stage:ib, dead, 457 days 305.7
TCGA-BR-8590-01A 62 years, male, white, stage:iiic, dead, 284 days 305.3
TCGA-MX-A663-01A 66 years, male, white, stage:iia, dead, 300 days 305.0
TCGA-VQ-A8PX-01A 51 years, male, stage:ia, alive, 1964 days 303.3
TCGA-BR-8382-01A 67 years, female, white, stage:iiic, dead, 762 days 302.0
TCGA-RD-A8MV-01A 56 years, male, white, stage:iiib, alive, 3720 days 300.6
TCGA-CG-5717-01A 58 years, male, stage:ii, dead, 212 days 300.3
TCGA-D7-8576-01A 54 years, female, white, stage:iiib, dead, 446 days 300.2
TCGA-VQ-A8P3-01A 72 years, male, white, stage:iiia, alive, 1132 days 300.2
TCGA-IN-A6RL-01A 84 years, male, white, dead, 406 days 300.1
TCGA-D7-A6EZ-01A 66 years, male, white, stage:iiia, dead, 618 days 299.8
TCGA-BR-6565-01A 67 years, male, white, stage:iib, dead, 279 days 299.3
TCGA-BR-7722-01A 62 years, male, white, stage:iib, dead, 466 days 299.0
TCGA-CD-8525-01A 82 years, female, asian, stage:iiia, alive, 383 days 298.8
TCGA-D7-A748-01A 41 years, female, white, stage:iv, dead, 132 days 298.4
TCGA-HU-A4H3-01A 56 years, female, asian, stage:iiic, alive, 882 days 297.8
TCGA-HU-A4HD-01A 73 years, male, asian, stage:iiia, alive, 1016 days 296.1
TCGA-HU-8610-01A 75 years, male, asian, stage:ia, alive, 23 days 295.8
TCGA-3M-AB46-01A male, white, stage:ib, alive, 1765 days 295.7
TCGA-BR-8686-01A 69 years, male, asian, stage:iiib, dead, 635 days 295.7
TCGA-BR-8080-01A 72 years, female, white, stage:iiic, dead, 292 days 294.9
TCGA-VQ-A922-01A 70 years, male, stage:iv, dead, 275 days 294.8
TCGA-ZA-A8F6-01A 71 years, male, white, stage:ib, alive, 525 days 294.3
TCGA-BR-4253-01A 80 years, female, white, stage:iiia, dead, 124 days 294.3
TCGA-HU-A4H0-01A 72 years, male, asian, stage:iiic, alive, 64 days 293.7
TCGA-VQ-A8PD-01A 69 years, male, white, stage:iiic, dead, 496 days 293.6
TCGA-MX-A5UG-01A 78 years, male, asian, stage:iiia, dead, 113 days 293.3
TCGA-HU-8608-01A 70 years, male, asian, stage:iiib, alive, 641 days 292.9
TCGA-BR-7958-01A 60 years, male, white, stage:iiib, alive, 899 days 292.7
TCGA-BR-8365-01A 70 years, female, white, stage:iia, dead, 533 days 291.4
TCGA-IN-8462-01A 80 years, male, white, stage:iib, alive, 572 days 291.3
TCGA-FP-A4BF-01A 68 years, male, white, stage:iiia, dead, 168 days 291.2
TCGA-D7-A4YU-01A 73 years, male, white, stage:iiib, alive, 500 days 289.2
TCGA-BR-8484-01A 61 years, male, white, stage:iiia, dead, 766 days 288.3
TCGA-B7-A5TK-01A 51 years, male, white, stage:iiia, alive, 288 days 287.6
TCGA-VQ-A91E-01A 67 years, female, white, stage:iiib, alive, 664 days 287.2
TCGA-CD-8526-01A 73 years, female, asian, stage:iiia, alive, 381 days 284.8
TCGA-HU-A4H6-01A 72 years, female, asian, stage:iiia, alive, 644 days 284.2
TCGA-BR-8296-01A 58 years, female, white, stage:iiic, dead, 474 days 283.3
TCGA-BR-8291-01A 61 years, male, white, stage:iib, dead, 607 days 283.0
TCGA-BR-8690-01A 54 years, female, white, stage:iiib, alive, 325 days 282.4
TCGA-D7-8570-01A 44 years, male, white, stage:iiib, alive, 752 days 282.0
TCGA-BR-8380-01A 55 years, male, white, stage:iiic, dead, 21 days 281.0
TCGA-IN-8663-01A 68 years, male, white, stage:iib, dead, 103 days 280.7
TCGA-BR-6564-01A 46 years, female, white, stage:iiia, dead, 794 days 280.2
TCGA-FP-7735-01A 77 years, male, black or african american, stage:ib, dead, 106 days 279.5
TCGA-D7-A6F2-01A 62 years, male, white, stage:ib, alive, 476 days 276.7
TCGA-R5-A7O7-01A 52 years, male, white, stage:iv, alive, 1389 days 276.2
TCGA-CG-5734-01A 68 years, male, stage:iiia, dead, 243 days 274.5
TCGA-FP-A9TM-01A 77 years, male, white, alive, 189 days 273.4
TCGA-VQ-A8PF-01A 77 years, male, stage:iiib, dead, 76 days 271.0
TCGA-RD-A8N0-01A 53 years, female, white, stage:iiib, alive, 1236 days 270.3
TCGA-D7-6524-01A 53 years, male, white, stage:ii, alive, 543 days 269.6
TCGA-BR-A4J6-01A 69 years, female, white, stage:iia, alive, 20 days 268.9
TCGA-BR-8367-01A 56 years, male, white, stage:iiib, dead, 801 days 266.9
TCGA-FP-8210-01A 48 years, male, asian, stage:iiia, dead, 153 days 265.8
TCGA-D7-8574-01A 72 years, male, white, stage:iiia, alive, 523 days 265.7
TCGA-BR-8485-01A 68 years, female, white, stage:iiic, alive, 280 days 264.4
TCGA-CG-4436-01A 57 years, male, stage:ib, alive, 243 days 264.2
TCGA-VQ-A8PM-01A 56 years, male, white, stage:iv, dead, 57 days 262.4
TCGA-HU-A4G8-01A 71 years, female, asian, stage:iib, alive, 690 days 261.8
TCGA-CD-5804-01A 90 years, male, asian, alive, 368 days 261.4
TCGA-VQ-A8PC-01A 65 years, male, white, stage:iiia, dead, 1407 days 259.3
TCGA-VQ-A91U-01A 78 years, male, asian, stage:iiia, dead, 52 days 259.0
TCGA-VQ-A91K-01A 69 years, male, white, stage:iiia, alive, 1862 days 258.6
TCGA-RD-A7BW-01A 68 years, female, white, stage:ib, dead, 156 days 258.0
TCGA-BR-6458-01A 57 years, female, white, stage:iib, dead, 588 days 254.5
TCGA-BR-8687-01A 67 years, female, white, stage:iiic, dead, 250 days 252.4
TCGA-VQ-A8P8-01A 72 years, female, black or african american, stage:iib, alive, 942 days 252.0
TCGA-FP-8099-01A 79 years, male, white, stage:iia, alive, 519 days 251.5
TCGA-VQ-A927-01A 81 years, male, white, stage:iiib, dead, 200 days 250.0
TCGA-R5-A805-01A 71 years, male, white, stage:iiib, dead, 281 days 247.2
TCGA-ZQ-A9CR-01A 79 years, female, white, stage:iiic, dead, 24 days 246.7
TCGA-BR-A44T-01A 53 years, female, white, stage:iia, alive, 1038 days 245.4
TCGA-VQ-AA6G-01A 68 years, male, white, stage:iia, dead, 792 days 245.2
TCGA-RD-A8N1-01A 70 years, male, white, stage:iiib, alive, 3519 days 244.4
TCGA-BR-6852-01A 64 years, female, white, stage:iia, alive, 1367 days 243.9
TCGA-HU-A4H2-01A 58 years, female, asian, stage:iiib, alive, 394 days 243.0
TCGA-CG-4301-01A 75 years, female, stage:iv, alive, 92 days 240.8
TCGA-VQ-AA6D-01A 52 years, female, stage:iiia, alive, 521 days 238.7
TCGA-BR-8369-01A 76 years, female, white, stage:iiib, alive, 427 days 237.0
TCGA-D7-6818-01A 53 years, male, white, stage:iiia, dead, 376 days 236.5
TCGA-BR-8297-01A 58 years, male, white, stage:iiic, alive, 225 days 234.0
TCGA-BR-8683-01A 75 years, male, asian, stage:iiib, dead, 300 days 233.5
TCGA-BR-8483-01A 59 years, male, white, stage:iiia, alive, 164 days 233.3
TCGA-BR-8364-01A 42 years, female, white, stage:iiic, alive, 675 days 229.2
TCGA-CD-8524-01A 61 years, female, asian, stage:ii, alive, 388 days 227.2
TCGA-F1-A448-01A 70 years, male, white, stage:iiib, alive, 647 days 227.2
TCGA-VQ-A8PK-01A 58 years, male, white, stage:iiib, dead, 543 days 226.5
TCGA-CD-8529-01A 65 years, male, asian, stage:iv, alive, 374 days 225.8
TCGA-RD-A8NB-01A 80 years, female, white, stage:iiia, dead, 513 days 225.8
TCGA-FP-7998-01A 77 years, male, white, stage:iiic, alive, 678 days 225.1
TCGA-D7-6822-01A 77 years, male, white, stage:ib, alive, 375 days 224.9
TCGA-BR-8592-01A 63 years, female, white, stage:iiib, dead, 191 days 224.3
TCGA-CD-5800-01A female, asian, stage:ii, alive, 400 days 223.4
TCGA-BR-A4J7-01A 49 years, male, asian, stage:iib, alive, 989 days 222.9
TCGA-EQ-8122-01A 72 years, female, white, stage:iib, dead, 243 days 221.8
TCGA-BR-A4J9-01A 55 years, male, white, stage:iia, alive, 14 days 221.7
TCGA-VQ-A91Q-01A 61 years, male, stage:iv, dead, 633 days 221.1
TCGA-BR-8486-01A 90 years, female, white, stage:ia, alive, 615 days 218.6
TCGA-BR-7901-01A 74 years, male, white, stage:iib, dead, 105 days 216.5
TCGA-VQ-A923-01A 90 years, male, white, stage:iiia, dead, 61 days 216.0
TCGA-BR-A4J5-01A 56 years, male, asian, stage:iiia, alive, 862 days 214.0
TCGA-VQ-AA6A-01A 56 years, male, white, stage:iiic, alive, 1184 days 212.8
TCGA-HU-A4GY-01A 77 years, female, asian, stage:iiia, alive, 8 days 211.2
TCGA-FP-7916-01A 78 years, male, asian, stage:iiic, dead, 428 days 210.1
TCGA-VQ-AA6K-01A 60 years, male, white, stage:iiic, dead, 378 days 208.0
TCGA-D7-8579-01A 66 years, female, white, stage:iib, alive, 636 days 207.2
TCGA-BR-6710-01A 41 years, male, white, stage:ib, alive, 273 days 207.1
TCGA-D7-A4Z0-01A 60 years, female, white, stage:iib, alive, 449 days 204.6
TCGA-BR-6802-01A 65 years, male, white, stage:iiia, alive, 940 days 202.0
TCGA-BR-6456-01A 74 years, female, white, stage:iib, dead, 526 days 201.2
TCGA-BR-8371-01A 62 years, male, white, stage:iiib, dead, 359 days 196.3
TCGA-FP-8211-01A 62 years, male, white, stage:iib, alive, 413 days 193.4
TCGA-IN-A7NT-01A 73 years, female, white, stage:iib, alive, 323 days 193.1
TCGA-BR-8060-01A 75 years, female, white, stage:iib, dead, 348 days 191.8
TCGA-BR-A4IV-01A 47 years, male, asian, stage:iiib, dead, 869 days 188.6
TCGA-VQ-A94P-01A 57 years, male, white, dead, 81 days 188.5
TCGA-CD-A489-01A 58 years, male, asian, stage:iia, dead, 344 days 187.6
TCGA-CG-4475-01A 76 years, male, stage:iib, alive, 699 days 187.3
TCGA-IP-7968-01A 74 years, male, white, stage:iiib, alive, 77 days 186.4
TCGA-D7-A747-01A 57 years, male, white, stage:iib, dead, 255 days 186.1
TCGA-FP-8631-01A 68 years, male, white, stage:iiia, alive, 17 days 185.1
TCGA-BR-7704-01A 69 years, female, white, stage:ii, alive, 1072 days 184.4
TCGA-VQ-A91Y-01A 67 years, male, white, stage:iiic, dead, 296 days 182.3
TCGA-FP-8209-01A 49 years, male, white, stage:ib, dead, 1811 days 180.1
TCGA-KB-A93G-01A 68 years, male, white, stage:ib, alive, 613 days 179.8
TCGA-VQ-A91V-01A 58 years, male, stage:iiia, alive, 1297 days 179.7
TCGA-VQ-A8E0-01A 68 years, male, black or african american, stage:iiia, dead, 562 days 176.2
TCGA-BR-8384-01A 69 years, male, white, stage:iiic, alive, 113 days 174.5
TCGA-VQ-AA68-01A 52 years, female, white, stage:iiic, alive, 1328 days 165.3
TCGA-CG-4443-01A 68 years, male, stage:ia, alive, 912 days 162.8
TCGA-BR-8373-01A 65 years, female, white, stage:iiia, alive, 450 days 162.7
TCGA-KB-A93J-01A 78 years, male, white, stage:ii, alive, 1124 days 155.8
TCGA-FP-7829-01A 69 years, male, white, stage:iib, alive, 594 days 155.7
TCGA-RD-A8N4-01A 58 years, female, white, stage:iiia, alive, 2171 days 150.2
TCGA-VQ-AA64-01A 68 years, male, white, stage:iiib, dead, 560 days 148.9
TCGA-D7-8578-01A 72 years, male, white, stage:ib, alive, 643 days 145.7
TCGA-D7-6520-01A 53 years, male, white, stage:iiia, alive, 573 days 137.6
TCGA-HU-A4GH-01A 75 years, male, asian, stage:ia, alive, 358 days 122.9
TCGA-RD-A8N2-01A 59 years, female, white, stage:ib, alive, 3540 days 107.0
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STOMACH CANCER - Protein expressioni

A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.

Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

 

Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.


Antibody HPA003512

Antibody HPA073501
 Staining
  High
  Medium
  Low
  Not detected
 Intensity
  Strong
  Moderate
  Weak
  Negative
 Quantity
  >75%
  75%-25%
  <25%
  None
 Location
  Nuclear
  Cytoplasmic/membranous
  Cytoplasmic/membranous,nuclear
  None
Click images for details

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