MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.7 nTPM
HPA Brain:5.7 nTPM
GTEx:5.7 nTPM
FANTOM5:12.9 Scaled Tags Per Million
Pig:11.8 nTPM
Mouse:13.7 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 5.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 4.3
1870 Female, age 42, unknown 5.0
1830 Male, age 51, unknown 4.9
2666 Male, age 74, left hemisphere 4.7
1827 Male, age 72, unknown 4.5
1833 Male, age 53, unknown 4.4
2019 Male, age 18, unknown 4.3
2411 Female, age 72, unknown 4.3
2828 Female, age 72, unknown 3.8
2586 Male, age 75, left hemisphere 3.7
2219 Male, age 76, both hemispheres 3.3
Dorsal raphe nucleus
nTPM: 4.6
2750 Male, age 76, both hemispheres 5.4
2298 Female, age 72, unknown 5.1
2047 Male, age 72, unknown 4.4
2016 Female, age 72, unknown 4.1
1828 Male, age 53, unknown 3.9
Inferior colliculus
nTPM: 4.0
2097 Female, age 72, unknown 4.5
2849 Male, age 72, unknown 4.1
1890 Male, age 53, unknown 3.8
1848 Female, age 42, unknown 3.7
Median raphe nucleus
nTPM: 5.7
2220 Male, age 76, midline 5.7
Periaquaductal grey, anterior
nTPM: 4.3
1947 Male, age 18, unknown 4.7
2502 Female, age 75, unknown 4.5
1795 Male, age 51, unknown 3.7
Periaquaductal grey, dorsal
nTPM: 4.0
2850 Male, age 76, both hemispheres 4.8
2464 Female, age 72, unknown 3.9
1840 Male, age 53, unknown 3.7
1831 Male, age 72, unknown 3.6
Periaquaductal grey, lateral
nTPM: 3.4
2053 Male, age 18, unknown 3.5
2140 Male, age 76, both hemispheres 3.4
2272 Male, age 74, both hemispheres 3.4
Pretectal area
nTPM: 4.4
1815 Male, age 53, unknown 5.6
1817 Female, age 42, unknown 4.9
2007 Male, age 72, unknown 4.8
1944 Female, age 72, unknown 4.6
1816 Male, age 51, unknown 4.4
2407 Male, age 75, both hemispheres 4.3
2825 Male, age 18, unknown 4.2
2224 Female, age 72, unknown 4.1
2273 Male, age 74, both hemispheres 4.1
2667 Female, age 75, unknown 3.9
2316 Male, age 76, right hemisphere 3.1
Red nucleus
nTPM: 4.7
2725 Female, age 75, unknown 6.4
1821 Female, age 72, unknown 5.2
1954 Female, age 42, unknown 5.2
1865 Male, age 51, unknown 4.9
2584 Male, age 75, left hemisphere 4.9
2503 Female, age 72, unknown 4.7
2823 Male, age 76, right hemisphere 4.7
2588 Male, age 74, left hemisphere 4.2
2785 Male, age 18, unknown 4.1
1904 Male, age 53, unknown 4.0
2769 Male, age 72, unknown 4.0
2227 Male, age 72, unknown 3.7
Substantia nigra
nTPM: 5.2
1916 Female, age 42, unknown 7.0
2241 Male, age 72, unknown 6.6
1941 Male, age 53, unknown 5.8
1851 Male, age 51, unknown 5.3
2699 Male, age 18, unknown 5.3
2665 Male, age 74, both hemispheres 5.1
1889 Female, age 72, unknown 5.0
2583 Male, age 75, right hemisphere 4.2
2409 Female, age 72, unknown 4.1
2590 Female, age 75, unknown 3.7
Superior colliculus
nTPM: 3.6
2587 Male, age 74, left hemisphere 4.7
1796 Male, age 53, unknown 4.2
2087 Female, age 72, unknown 4.0
2668 Female, age 75, unknown 3.8
1839 Male, age 51, unknown 3.7
1995 Male, age 72, unknown 3.7
1895 Male, age 76, right hemisphere 3.6
2261 Male, age 18, unknown 3.6
1913 Female, age 42, unknown 3.0
2664 Male, age 75, both hemispheres 2.2
Ventral tegmental area
nTPM: 4.6
2218 Male, age 76, both hemispheres 5.8
2410 Female, age 72, unknown 5.0
1915 Female, age 42, unknown 4.8
2223 Female, age 72, unknown 4.2
1942 Male, age 51, unknown 4.0
2021 Male, age 53, unknown 4.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.7
Samples: 139

Max nTPM: 11.4
Min nTPM: 2.1
Std nTPM: 1.5
Median nTPM: 5.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 11.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 9.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 9.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 9.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 8.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 8.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 8.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 8.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 7.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 7.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 7.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.9
FF:10158-103A5 76 years, female 12.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.5
Samples: 4

Max nTPM: 11.6
Min nTPM: 9.3
Sample A Female 9.3
Sample B Female 9.8
Sample C Male 11.6
Sample D Male 11.4
Midbrain
nTPM: 11.8
Samples: 4

Max nTPM: 12.6
Min nTPM: 10.9
Sample A Female 12.6
Sample B Female 10.9
Sample C Male 11.9
Sample D Male 11.6
Periaqueductal gray
nTPM: 10.5
Samples: 3

Max nTPM: 10.9
Min nTPM: 9.9
Sample B Female 10.9
Sample C Male 9.9
Sample D Male 10.8
Superior colliculi
nTPM: 10.5
Samples: 4

Max nTPM: 11.9
Min nTPM: 9.5
Sample A Female 9.5
Sample B Female 10.3
Sample C Male 11.9
Sample D Male 10.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.7
Samples: 4

Max nTPM: 14.7
Min nTPM: 12.6
Sample A Male 13.3
Sample B Male 14.7
Sample C Female 14.3
Sample D Female 12.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68667563 Antisense, RP_050201_02_E07, Mouse strain C57BL/6J (56 days, male) 0.1

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