HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:49.8 nTPM
HPA Brain:37.9 nTPM
GTEx:49.8 nTPM
FANTOM5:56.8 Scaled Tags Per Million
Pig:50.3 nTPM
Mouse:88.0 nTPM
Allen mouse:14.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039363Antibody HPA039456
Glial cells MediumHigh
Neuronal cells LowHigh




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 37.9
Sample id Sample description nTPM
Hippocampus
nTPM: 35.9
2529 Female, age 94, left hemisphere 38.5
1898 Male, age 80, left hemisphere 38.0
2621 Female, age 67, right hemisphere 37.0
1855 Male, age 76, left hemisphere 35.2
2148 Female, age 91, left hemisphere 34.1
1911 Female, age 85, right hemisphere 32.6
Dentate gyrus
nTPM: 36.7
2010 Male, age 76, both hemispheres 42.9
2530 Female, age 94, left hemisphere 38.6
1927 Female, age 91, both hemispheres 37.1
2246 Female, age 85, both hemispheres 36.4
2528 Male, age 74, both hemispheres 33.4
2531 Female, age 67, both hemispheres 31.9
Entorhinal gyrus
nTPM: 34.9
2764 Male, age 80, right hemisphere 38.7
1787 Male, age 76, left hemisphere 37.4
2117 Female, age 91, right hemisphere 36.2
1938 Female, age 85, left hemisphere 33.9
2613 Female, age 94, left hemisphere 31.8
2686 Male, age 75, right hemisphere 31.6
Hippocampus, CA1
nTPM: 36.2
2749 Male, age 80, left hemisphere 40.1
1873 Female, age 85, both hemispheres 38.3
2527 Male, age 74, both hemispheres 34.6
2045 Male, age 76, both hemispheres 34.2
2082 Female, age 91, right hemisphere 33.6
Hippocampus, CA2
nTPM: 37.6
1892 Male, age 76, both hemispheres 46.3
2249 Male, age 74, both hemispheres 41.3
1963 Male, age 80, left hemisphere 36.5
1940 Female, age 85, left hemisphere 34.5
2113 Female, age 91, right hemisphere 34.0
2437 Female, age 94, left hemisphere 32.9
Hippocampus, CA3
nTPM: 36.2
2436 Male, age 74, both hemispheres 50.6
1867 Male, age 76, both hemispheres 37.7
2620 Female, age 94, left hemisphere 34.2
1891 Female, age 85, both hemispheres 32.8
2861 Female, age 67, both hemispheres 32.8
2137 Male, age 80, left hemisphere 28.9
Parahippocampal cortex
nTPM: 35.5
2532 Female, age 72, left hemisphere 39.6
1850 Male, age 80, both hemispheres 38.3
1990 Female, age 91, right hemisphere 37.1
2018 Male, age 76, both hemispheres 37.0
1933 Female, age 85, both hemispheres 36.0
2692 Male, age 74, both hemispheres 35.7
2250 Female, age 67, right hemisphere 35.2
2245 Female, age 91, both hemispheres 34.0
2622 Female, age 67, right hemisphere 31.4
2693 Female, age 94, both hemispheres 30.9
Perirhinal gyrus
nTPM: 37.9
1847 Female, age 91, left hemisphere 44.6
1794 Male, age 80, right hemisphere 41.6
2848 Male, age 76, right hemisphere 34.9
1841 Female, age 85, right hemisphere 34.7
2521 Female, age 94, right hemisphere 33.3
Subiculum
nTPM: 32.4
1901 Male, age 80, both hemispheres 33.7
1977 Female, age 85, both hemispheres 33.4
2619 Male, age 74, both hemispheres 33.3
2438 Female, age 94, left hemisphere 32.0
2042 Male, age 76, both hemispheres 31.5
2729 Female, age 91, right hemisphere 30.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 49.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 49.8
Samples: 197

Max nTPM: 76.4
Min nTPM: 31.8
Std nTPM: 8.8
Median nTPM: 48.9
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 76.4
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 76.3
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 72.3
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 71.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 69.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 68.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 68.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 68.1
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 67.0
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 66.9
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 66.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 56.8
FF:10169-103B7 60 years, female 62.3
FF:10153-102I9 76 years, female 51.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 50.3
Pig sample Sample description nTPM
Subiculum
nTPM: 36.6
Samples: 4

Max nTPM: 40.4
Min nTPM: 31.6
Sample A Female 40.4
Sample B Female 38.0
Sample C Male 36.4
Sample D Male 31.6
Dorsal hippocampus
nTPM: 50.3
Samples: 4

Max nTPM: 64.6
Min nTPM: 33.7
Sample A Female 64.6
Sample B Female 51.5
Sample C Male 51.5
Sample D Male 33.7
Entorhinal cortex
nTPM: 37.5
Samples: 4

Max nTPM: 43.3
Min nTPM: 30.1
Sample A Female 39.5
Sample B Female 43.3
Sample C Male 37.0
Sample D Male 30.1
Ventral hippocampus
nTPM: 45.6
Samples: 4

Max nTPM: 51.4
Min nTPM: 35.0
Sample A Female 46.5
Sample B Female 35.0
Sample C Male 51.4
Sample D Male 49.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 88.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 87.5
Samples: 4

Max nTPM: 93.8
Min nTPM: 82.8
Sample A Male 83.4
Sample B Male 82.8
Sample C Female 90.1
Sample D Female 93.8
Hippocampal formation
nTPM: 88.0
Samples: 4

Max nTPM: 96.7
Min nTPM: 80.7
Sample A Male 96.7
Sample B Male 80.7
Sample C Female 85.9
Sample D Female 88.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 14.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 14.4
638718 Antisense, RP_040831_02_D06, Mouse strain C57BL/6J (56 days, male) 14.4
72007751 Antisense, RP_051017_01_A12, Mouse strain C57BL/6J (56 days, male) 14.4

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