MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:61.9 nTPM
HPA Brain:53.2 nTPM
GTEx:61.9 nTPM
FANTOM5:54.2 Scaled Tags Per Million
Pig:71.7 nTPM
Mouse:81.4 nTPM
Allen mouse:8.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 53.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.8
2219 Male, age 76, both hemispheres 48.8
1827 Male, age 72, unknown 48.5
2666 Male, age 74, left hemisphere 44.9
2019 Male, age 18, unknown 43.2
2411 Female, age 72, unknown 42.4
1833 Male, age 53, unknown 41.8
1870 Female, age 42, unknown 41.5
2828 Female, age 72, unknown 41.2
1830 Male, age 51, unknown 40.2
2586 Male, age 75, left hemisphere 35.3
Dorsal raphe nucleus
nTPM: 43.8
2298 Female, age 72, unknown 51.2
2750 Male, age 76, both hemispheres 45.5
1828 Male, age 53, unknown 45.4
2047 Male, age 72, unknown 41.0
2016 Female, age 72, unknown 36.1
Inferior colliculus
nTPM: 41.6
2849 Male, age 72, unknown 43.7
2097 Female, age 72, unknown 42.6
1890 Male, age 53, unknown 41.1
1848 Female, age 42, unknown 39.2
Median raphe nucleus
nTPM: 53.2
2220 Male, age 76, midline 53.2
Periaquaductal grey, anterior
nTPM: 46.4
1947 Male, age 18, unknown 51.0
1795 Male, age 51, unknown 49.9
2502 Female, age 75, unknown 38.2
Periaquaductal grey, dorsal
nTPM: 40.4
2850 Male, age 76, both hemispheres 45.8
1840 Male, age 53, unknown 39.5
1831 Male, age 72, unknown 38.8
2464 Female, age 72, unknown 37.5
Periaquaductal grey, lateral
nTPM: 39.9
2272 Male, age 74, both hemispheres 45.4
2140 Male, age 76, both hemispheres 39.6
2053 Male, age 18, unknown 34.7
Pretectal area
nTPM: 45.0
1816 Male, age 51, unknown 51.6
1817 Female, age 42, unknown 50.1
2007 Male, age 72, unknown 49.8
2667 Female, age 75, unknown 47.9
2224 Female, age 72, unknown 46.4
1815 Male, age 53, unknown 46.0
1944 Female, age 72, unknown 44.9
2825 Male, age 18, unknown 43.4
2273 Male, age 74, both hemispheres 43.2
2407 Male, age 75, both hemispheres 37.8
2316 Male, age 76, right hemisphere 33.8
Red nucleus
nTPM: 42.2
2725 Female, age 75, unknown 53.6
1821 Female, age 72, unknown 46.2
2584 Male, age 75, left hemisphere 43.0
1904 Male, age 53, unknown 42.6
2503 Female, age 72, unknown 42.5
2785 Male, age 18, unknown 42.1
2823 Male, age 76, right hemisphere 40.8
1954 Female, age 42, unknown 40.5
2227 Male, age 72, unknown 39.1
2769 Male, age 72, unknown 39.1
1865 Male, age 51, unknown 38.7
2588 Male, age 74, left hemisphere 38.6
Substantia nigra
nTPM: 50.2
1916 Female, age 42, unknown 69.3
2241 Male, age 72, unknown 56.1
1851 Male, age 51, unknown 53.7
1889 Female, age 72, unknown 49.2
2665 Male, age 74, both hemispheres 49.2
2409 Female, age 72, unknown 48.5
1941 Male, age 53, unknown 47.2
2699 Male, age 18, unknown 47.0
2590 Female, age 75, unknown 41.0
2583 Male, age 75, right hemisphere 40.4
Superior colliculus
nTPM: 39.9
2587 Male, age 74, left hemisphere 44.6
1796 Male, age 53, unknown 44.0
2261 Male, age 18, unknown 43.8
2087 Female, age 72, unknown 43.3
2668 Female, age 75, unknown 42.3
1913 Female, age 42, unknown 39.4
1895 Male, age 76, right hemisphere 39.3
1839 Male, age 51, unknown 37.3
1995 Male, age 72, unknown 33.6
2664 Male, age 75, both hemispheres 31.7
Ventral tegmental area
nTPM: 45.8
1915 Female, age 42, unknown 50.8
2410 Female, age 72, unknown 49.2
2218 Male, age 76, both hemispheres 48.7
2223 Female, age 72, unknown 42.8
2021 Male, age 53, unknown 41.8
1942 Male, age 51, unknown 41.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 61.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 61.9
Samples: 139

Max nTPM: 108.6
Min nTPM: 38.3
Std nTPM: 14.3
Median nTPM: 59.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 108.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 105.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 103.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 93.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 92.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 88.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 88.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 87.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 85.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 85.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 85.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 54.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 54.2
FF:10158-103A5 76 years, female 54.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 71.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 65.9
Samples: 4

Max nTPM: 74.6
Min nTPM: 51.3
Sample A Female 74.6
Sample B Female 51.3
Sample C Male 67.6
Sample D Male 69.9
Midbrain
nTPM: 71.7
Samples: 4

Max nTPM: 115.0
Min nTPM: 51.4
Sample A Female 115.0
Sample B Female 68.0
Sample C Male 51.4
Sample D Male 52.4
Periaqueductal gray
nTPM: 56.3
Samples: 3

Max nTPM: 61.7
Min nTPM: 48.8
Sample B Female 58.4
Sample C Male 61.7
Sample D Male 48.8
Superior colliculi
nTPM: 63.0
Samples: 4

Max nTPM: 67.5
Min nTPM: 56.8
Sample A Female 67.5
Sample B Female 56.8
Sample C Male 61.1
Sample D Male 66.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 81.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 81.4
Samples: 4

Max nTPM: 85.8
Min nTPM: 76.8
Sample A Male 85.8
Sample B Male 76.8
Sample C Female 78.9
Sample D Female 84.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.7
72007751 Antisense, RP_051017_01_A12, Mouse strain C57BL/6J (56 days, male) 10.4
638718 Antisense, RP_040831_02_D06, Mouse strain C57BL/6J (56 days, male) 7.1

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