MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:108.8 nTPM
HPA Brain:97.8 nTPM
GTEx:108.8 nTPM
FANTOM5:110.9 Scaled Tags Per Million
Pig:122.2 nTPM
Mouse:222.8 nTPM
Allen mouse:16.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 97.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.5
2828 Female, age 72, unknown 111.9
2586 Male, age 75, left hemisphere 110.5
1827 Male, age 72, unknown 99.9
2219 Male, age 76, both hemispheres 97.9
2411 Female, age 72, unknown 84.3
1833 Male, age 53, unknown 83.1
1870 Female, age 42, unknown 78.3
2666 Male, age 74, left hemisphere 76.8
1830 Male, age 51, unknown 76.5
2019 Male, age 18, unknown 76.2
Dorsal raphe nucleus
nTPM: 86.5
2047 Male, age 72, unknown 107.5
2298 Female, age 72, unknown 86.2
1828 Male, age 53, unknown 85.3
2750 Male, age 76, both hemispheres 84.3
2016 Female, age 72, unknown 69.0
Inferior colliculus
nTPM: 83.2
2849 Male, age 72, unknown 108.0
1848 Female, age 42, unknown 83.6
1890 Male, age 53, unknown 74.1
2097 Female, age 72, unknown 67.1
Median raphe nucleus
nTPM: 97.8
2220 Male, age 76, midline 97.8
Periaquaductal grey, anterior
nTPM: 97.5
1795 Male, age 51, unknown 104.4
2502 Female, age 75, unknown 102.9
1947 Male, age 18, unknown 85.1
Periaquaductal grey, dorsal
nTPM: 80.5
1840 Male, age 53, unknown 92.3
2850 Male, age 76, both hemispheres 92.2
2464 Female, age 72, unknown 72.4
1831 Male, age 72, unknown 65.1
Periaquaductal grey, lateral
nTPM: 79.3
2053 Male, age 18, unknown 86.5
2140 Male, age 76, both hemispheres 80.2
2272 Male, age 74, both hemispheres 71.1
Pretectal area
nTPM: 96.3
1816 Male, age 51, unknown 113.2
2007 Male, age 72, unknown 110.7
2667 Female, age 75, unknown 108.8
1944 Female, age 72, unknown 105.8
1817 Female, age 42, unknown 101.9
1815 Male, age 53, unknown 97.9
2825 Male, age 18, unknown 88.9
2224 Female, age 72, unknown 84.9
2316 Male, age 76, right hemisphere 84.3
2273 Male, age 74, both hemispheres 83.4
2407 Male, age 75, both hemispheres 79.2
Red nucleus
nTPM: 78.3
2588 Male, age 74, left hemisphere 88.3
2785 Male, age 18, unknown 83.5
2725 Female, age 75, unknown 83.4
2823 Male, age 76, right hemisphere 82.0
2584 Male, age 75, left hemisphere 81.3
2769 Male, age 72, unknown 81.0
1954 Female, age 42, unknown 77.7
2503 Female, age 72, unknown 74.5
1821 Female, age 72, unknown 73.8
2227 Male, age 72, unknown 73.6
1904 Male, age 53, unknown 72.2
1865 Male, age 51, unknown 68.7
Substantia nigra
nTPM: 95.1
1916 Female, age 42, unknown 153.2
2699 Male, age 18, unknown 112.9
1851 Male, age 51, unknown 105.5
1889 Female, age 72, unknown 104.8
1941 Male, age 53, unknown 88.2
2583 Male, age 75, right hemisphere 88.2
2409 Female, age 72, unknown 86.8
2665 Male, age 74, both hemispheres 78.3
2241 Male, age 72, unknown 69.2
2590 Female, age 75, unknown 63.6
Superior colliculus
nTPM: 89.6
2664 Male, age 75, both hemispheres 116.3
1796 Male, age 53, unknown 112.5
2668 Female, age 75, unknown 99.2
2087 Female, age 72, unknown 97.5
2261 Male, age 18, unknown 87.9
1839 Male, age 51, unknown 85.0
2587 Male, age 74, left hemisphere 79.7
1895 Male, age 76, right hemisphere 79.0
1913 Female, age 42, unknown 70.7
1995 Male, age 72, unknown 68.0
Ventral tegmental area
nTPM: 95.3
1915 Female, age 42, unknown 115.7
2218 Male, age 76, both hemispheres 101.9
2410 Female, age 72, unknown 101.0
1942 Male, age 51, unknown 88.6
2021 Male, age 53, unknown 83.5
2223 Female, age 72, unknown 81.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 108.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 108.8
Samples: 139

Max nTPM: 228.2
Min nTPM: 39.8
Std nTPM: 37.0
Median nTPM: 104.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 228.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 202.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 199.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 190.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 185.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 185.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 178.0
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 177.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 172.0
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 169.2
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 169.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 110.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 110.9
FF:10158-103A5 76 years, female 110.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 122.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 109.3
Samples: 4

Max nTPM: 144.4
Min nTPM: 72.2
Sample A Female 144.4
Sample B Female 79.7
Sample C Male 140.8
Sample D Male 72.2
Midbrain
nTPM: 116.7
Samples: 4

Max nTPM: 142.7
Min nTPM: 100.8
Sample A Female 100.8
Sample B Female 100.8
Sample C Male 142.7
Sample D Male 122.6
Periaqueductal gray
nTPM: 94.2
Samples: 3

Max nTPM: 110.5
Min nTPM: 79.0
Sample B Female 93.1
Sample C Male 110.5
Sample D Male 79.0
Superior colliculi
nTPM: 122.3
Samples: 4

Max nTPM: 148.8
Min nTPM: 72.5
Sample A Female 148.8
Sample B Female 72.5
Sample C Male 147.4
Sample D Male 120.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 222.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 222.8
Samples: 4

Max nTPM: 228.5
Min nTPM: 219.9
Sample A Male 219.9
Sample B Male 220.0
Sample C Female 222.6
Sample D Female 228.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.2
413811 Antisense, RP_040809_01_F07, Mouse strain C57BL/6J (56 days, male) 16.2

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