MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.0 nTPM
HPA Brain:31.0 nTPM
GTEx:4.0 nTPM
FANTOM5:11.4 Scaled Tags Per Million
Pig:23.0 nTPM
Mouse:14.9 nTPM
Allen mouse:6.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.1
2666 Male, age 74, left hemisphere 51.0
2586 Male, age 75, left hemisphere 50.3
2019 Male, age 18, unknown 44.5
1827 Male, age 72, unknown 27.6
2219 Male, age 76, both hemispheres 25.4
2828 Female, age 72, unknown 24.7
1830 Male, age 51, unknown 20.3
1833 Male, age 53, unknown 20.1
1870 Female, age 42, unknown 18.9
2411 Female, age 72, unknown 18.6
Dorsal raphe nucleus
nTPM: 18.7
1828 Male, age 53, unknown 25.8
2047 Male, age 72, unknown 18.8
2750 Male, age 76, both hemispheres 17.1
2298 Female, age 72, unknown 17.0
2016 Female, age 72, unknown 15.0
Inferior colliculus
nTPM: 24.9
2097 Female, age 72, unknown 29.9
1890 Male, age 53, unknown 23.9
1848 Female, age 42, unknown 23.0
2849 Male, age 72, unknown 22.8
Median raphe nucleus
nTPM: 19.7
2220 Male, age 76, midline 19.7
Periaquaductal grey, anterior
nTPM: 20.9
1795 Male, age 51, unknown 23.1
2502 Female, age 75, unknown 23.0
1947 Male, age 18, unknown 16.5
Periaquaductal grey, dorsal
nTPM: 19.2
1831 Male, age 72, unknown 24.3
2464 Female, age 72, unknown 19.9
2850 Male, age 76, both hemispheres 16.7
1840 Male, age 53, unknown 15.8
Periaquaductal grey, lateral
nTPM: 18.6
2140 Male, age 76, both hemispheres 19.1
2272 Male, age 74, both hemispheres 18.4
2053 Male, age 18, unknown 18.2
Pretectal area
nTPM: 31.0
1816 Male, age 51, unknown 51.1
1817 Female, age 42, unknown 49.6
2007 Male, age 72, unknown 49.0
1944 Female, age 72, unknown 47.1
1815 Male, age 53, unknown 38.1
2407 Male, age 75, both hemispheres 20.3
2667 Female, age 75, unknown 19.6
2224 Female, age 72, unknown 17.9
2316 Male, age 76, right hemisphere 16.9
2825 Male, age 18, unknown 16.4
2273 Male, age 74, both hemispheres 15.3
Red nucleus
nTPM: 24.7
2785 Male, age 18, unknown 43.0
2584 Male, age 75, left hemisphere 35.5
2588 Male, age 74, left hemisphere 26.7
2823 Male, age 76, right hemisphere 26.5
1821 Female, age 72, unknown 23.7
2725 Female, age 75, unknown 23.1
1865 Male, age 51, unknown 21.6
2503 Female, age 72, unknown 20.7
2227 Male, age 72, unknown 19.4
1954 Female, age 42, unknown 18.9
2769 Male, age 72, unknown 18.8
1904 Male, age 53, unknown 17.8
Substantia nigra
nTPM: 25.4
1941 Male, age 53, unknown 40.0
1889 Female, age 72, unknown 35.8
2665 Male, age 74, both hemispheres 29.4
2583 Male, age 75, right hemisphere 28.4
1916 Female, age 42, unknown 25.2
1851 Male, age 51, unknown 22.8
2241 Male, age 72, unknown 18.9
2409 Female, age 72, unknown 18.8
2590 Female, age 75, unknown 17.7
2699 Male, age 18, unknown 16.9
Superior colliculus
nTPM: 28.2
2668 Female, age 75, unknown 48.4
2087 Female, age 72, unknown 39.2
2261 Male, age 18, unknown 28.6
1913 Female, age 42, unknown 26.0
1995 Male, age 72, unknown 25.4
1895 Male, age 76, right hemisphere 24.5
1796 Male, age 53, unknown 24.3
2664 Male, age 75, both hemispheres 23.5
1839 Male, age 51, unknown 22.8
2587 Male, age 74, left hemisphere 19.4
Ventral tegmental area
nTPM: 19.6
2218 Male, age 76, both hemispheres 23.7
2410 Female, age 72, unknown 22.3
1915 Female, age 42, unknown 19.8
2223 Female, age 72, unknown 18.4
1942 Male, age 51, unknown 18.0
2021 Male, age 53, unknown 15.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.0
Samples: 139

Max nTPM: 22.7
Min nTPM: 0.5
Std nTPM: 2.6
Median nTPM: 3.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 22.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 16.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 12.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 10.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 8.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 7.7
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 7.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 7.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 7.1
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 6.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 6.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.4
FF:10158-103A5 76 years, female 11.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.3
Samples: 4

Max nTPM: 14.2
Min nTPM: 10.7
Sample A Female 14.2
Sample B Female 10.7
Sample C Male 13.5
Sample D Male 10.9
Midbrain
nTPM: 16.0
Samples: 4

Max nTPM: 26.2
Min nTPM: 8.9
Sample A Female 8.9
Sample B Female 9.7
Sample C Male 26.2
Sample D Male 19.1
Periaqueductal gray
nTPM: 10.7
Samples: 3

Max nTPM: 13.0
Min nTPM: 9.5
Sample B Female 9.7
Sample C Male 13.0
Sample D Male 9.5
Superior colliculi
nTPM: 23.0
Samples: 4

Max nTPM: 33.6
Min nTPM: 16.7
Sample A Female 20.7
Sample B Female 16.7
Sample C Male 33.6
Sample D Male 20.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.9
Samples: 4

Max nTPM: 15.8
Min nTPM: 14.0
Sample A Male 14.0
Sample B Male 14.5
Sample C Female 15.8
Sample D Female 15.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.0
69838527 Antisense, RP_050309_02_B12, Mouse strain C57BL/6J (56 days, male) 6.4
72080207 Antisense, RP_051017_03_D04, Mouse strain C57BL/6J (56 days, male) 5.7

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