MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:50.9 nTPM
HPA Brain:23.5 nTPM
GTEx:50.9 nTPM
FANTOM5:167.4 Scaled Tags Per Million
Pig:35.6 nTPM
Mouse:0.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.7
1833 Male, age 53, unknown 14.9
1830 Male, age 51, unknown 12.9
1870 Female, age 42, unknown 12.3
2411 Female, age 72, unknown 11.8
2019 Male, age 18, unknown 8.5
2666 Male, age 74, left hemisphere 5.1
2828 Female, age 72, unknown 4.2
1827 Male, age 72, unknown 4.1
2219 Male, age 76, both hemispheres 1.6
2586 Male, age 75, left hemisphere 1.3
Dorsal raphe nucleus
nTPM: 17.4
2298 Female, age 72, unknown 40.7
2016 Female, age 72, unknown 27.9
1828 Male, age 53, unknown 9.3
2750 Male, age 76, both hemispheres 5.1
2047 Male, age 72, unknown 3.9
Inferior colliculus
nTPM: 9.6
2097 Female, age 72, unknown 20.3
2849 Male, age 72, unknown 7.4
1890 Male, age 53, unknown 6.6
1848 Female, age 42, unknown 4.1
Median raphe nucleus
nTPM: 7.2
2220 Male, age 76, midline 7.2
Periaquaductal grey, anterior
nTPM: 9.7
1795 Male, age 51, unknown 19.4
1947 Male, age 18, unknown 6.0
2502 Female, age 75, unknown 3.8
Periaquaductal grey, dorsal
nTPM: 23.5
1831 Male, age 72, unknown 46.9
2464 Female, age 72, unknown 17.4
2850 Male, age 76, both hemispheres 16.7
1840 Male, age 53, unknown 12.8
Periaquaductal grey, lateral
nTPM: 19.0
2272 Male, age 74, both hemispheres 36.0
2140 Male, age 76, both hemispheres 11.5
2053 Male, age 18, unknown 9.3
Pretectal area
nTPM: 11.5
2224 Female, age 72, unknown 40.2
2273 Male, age 74, both hemispheres 35.5
2316 Male, age 76, right hemisphere 12.4
2407 Male, age 75, both hemispheres 8.6
2825 Male, age 18, unknown 6.7
2667 Female, age 75, unknown 5.2
1815 Male, age 53, unknown 4.6
1817 Female, age 42, unknown 4.4
1944 Female, age 72, unknown 3.9
2007 Male, age 72, unknown 2.8
1816 Male, age 51, unknown 2.3
Red nucleus
nTPM: 6.2
2725 Female, age 75, unknown 10.7
2769 Male, age 72, unknown 8.2
2785 Male, age 18, unknown 8.2
1865 Male, age 51, unknown 7.2
1904 Male, age 53, unknown 6.8
2227 Male, age 72, unknown 6.6
2503 Female, age 72, unknown 6.6
1954 Female, age 42, unknown 6.3
2584 Male, age 75, left hemisphere 5.9
2823 Male, age 76, right hemisphere 4.9
1821 Female, age 72, unknown 2.5
2588 Male, age 74, left hemisphere 0.8
Substantia nigra
nTPM: 8.0
2590 Female, age 75, unknown 20.6
2583 Male, age 75, right hemisphere 14.9
2699 Male, age 18, unknown 10.7
2665 Male, age 74, both hemispheres 8.0
2241 Male, age 72, unknown 5.8
1941 Male, age 53, unknown 5.1
1916 Female, age 42, unknown 4.8
1851 Male, age 51, unknown 4.7
1889 Female, age 72, unknown 3.8
2409 Female, age 72, unknown 2.0
Superior colliculus
nTPM: 12.2
1995 Male, age 72, unknown 30.6
2587 Male, age 74, left hemisphere 24.6
1913 Female, age 42, unknown 18.6
2664 Male, age 75, both hemispheres 9.9
1796 Male, age 53, unknown 8.3
2087 Female, age 72, unknown 7.7
2261 Male, age 18, unknown 7.7
1839 Male, age 51, unknown 6.3
2668 Female, age 75, unknown 4.4
1895 Male, age 76, right hemisphere 3.4
Ventral tegmental area
nTPM: 13.1
2021 Male, age 53, unknown 25.2
1915 Female, age 42, unknown 16.8
2223 Female, age 72, unknown 11.1
1942 Male, age 51, unknown 10.7
2410 Female, age 72, unknown 8.3
2218 Male, age 76, both hemispheres 6.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.9
Samples: 139

Max nTPM: 416.6
Min nTPM: 1.2
Std nTPM: 63.7
Median nTPM: 24.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 416.6
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 245.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 228.1
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 227.8
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 202.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 193.7
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 189.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 186.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 166.6
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 158.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 155.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 167.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 167.4
FF:10158-103A5 76 years, female 167.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 35.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35.6
Samples: 4

Max nTPM: 67.6
Min nTPM: 21.2
Sample A Female 21.8
Sample B Female 67.6
Sample C Male 21.2
Sample D Male 31.9
Midbrain
nTPM: 13.7
Samples: 4

Max nTPM: 18.8
Min nTPM: 8.4
Sample A Female 18.8
Sample B Female 11.0
Sample C Male 16.7
Sample D Male 8.4
Periaqueductal gray
nTPM: 12.6
Samples: 3

Max nTPM: 16.8
Min nTPM: 8.6
Sample B Female 12.3
Sample C Male 16.8
Sample D Male 8.6
Superior colliculi
nTPM: 20.2
Samples: 4

Max nTPM: 25.4
Min nTPM: 13.9
Sample A Female 24.0
Sample B Female 25.4
Sample C Male 17.3
Sample D Male 13.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68744516 Antisense, RP_050208_01_A10, Mouse strain C57BL/6J (56 days, male) 0.1

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