MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:126.4 nTPM
HPA Brain:169.1 nTPM
GTEx:126.4 nTPM
FANTOM5:232.4 Scaled Tags Per Million
Pig:168.4 nTPM
Mouse:117.8 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 169.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 156.6
2586 Male, age 75, left hemisphere 200.3
2219 Male, age 76, both hemispheres 181.4
1827 Male, age 72, unknown 174.2
2828 Female, age 72, unknown 164.3
2666 Male, age 74, left hemisphere 150.7
1870 Female, age 42, unknown 142.7
1830 Male, age 51, unknown 140.6
2019 Male, age 18, unknown 138.1
1833 Male, age 53, unknown 137.8
2411 Female, age 72, unknown 136.0
Dorsal raphe nucleus
nTPM: 119.4
2047 Male, age 72, unknown 127.4
2750 Male, age 76, both hemispheres 126.2
2298 Female, age 72, unknown 121.5
1828 Male, age 53, unknown 115.3
2016 Female, age 72, unknown 106.7
Inferior colliculus
nTPM: 158.1
2849 Male, age 72, unknown 187.1
1848 Female, age 42, unknown 172.5
2097 Female, age 72, unknown 143.2
1890 Male, age 53, unknown 129.6
Median raphe nucleus
nTPM: 131.4
2220 Male, age 76, midline 131.4
Periaquaductal grey, anterior
nTPM: 168.5
1947 Male, age 18, unknown 173.3
2502 Female, age 75, unknown 170.3
1795 Male, age 51, unknown 162.0
Periaquaductal grey, dorsal
nTPM: 128.8
1840 Male, age 53, unknown 143.2
2464 Female, age 72, unknown 132.6
2850 Male, age 76, both hemispheres 119.9
1831 Male, age 72, unknown 119.7
Periaquaductal grey, lateral
nTPM: 127.7
2053 Male, age 18, unknown 134.8
2140 Male, age 76, both hemispheres 125.1
2272 Male, age 74, both hemispheres 123.4
Pretectal area
nTPM: 169.1
2007 Male, age 72, unknown 214.2
1816 Male, age 51, unknown 210.3
1817 Female, age 42, unknown 200.2
1944 Female, age 72, unknown 189.8
2667 Female, age 75, unknown 183.9
1815 Male, age 53, unknown 181.6
2407 Male, age 75, both hemispheres 152.0
2825 Male, age 18, unknown 148.1
2316 Male, age 76, right hemisphere 131.9
2224 Female, age 72, unknown 126.5
2273 Male, age 74, both hemispheres 121.0
Red nucleus
nTPM: 137.6
2785 Male, age 18, unknown 163.3
2584 Male, age 75, left hemisphere 156.6
2588 Male, age 74, left hemisphere 151.6
2503 Female, age 72, unknown 138.9
1821 Female, age 72, unknown 138.4
2769 Male, age 72, unknown 136.3
1865 Male, age 51, unknown 136.2
2227 Male, age 72, unknown 131.1
1904 Male, age 53, unknown 129.2
1954 Female, age 42, unknown 127.1
2725 Female, age 75, unknown 123.2
2823 Male, age 76, right hemisphere 119.8
Substantia nigra
nTPM: 148.1
1941 Male, age 53, unknown 193.8
2665 Male, age 74, both hemispheres 190.2
1889 Female, age 72, unknown 180.3
2583 Male, age 75, right hemisphere 144.1
1851 Male, age 51, unknown 142.6
1916 Female, age 42, unknown 134.7
2699 Male, age 18, unknown 133.6
2409 Female, age 72, unknown 133.4
2590 Female, age 75, unknown 125.3
2241 Male, age 72, unknown 102.7
Superior colliculus
nTPM: 161.4
2668 Female, age 75, unknown 185.0
1796 Male, age 53, unknown 174.7
2261 Male, age 18, unknown 170.2
2664 Male, age 75, both hemispheres 166.1
1895 Male, age 76, right hemisphere 165.4
2087 Female, age 72, unknown 163.1
1839 Male, age 51, unknown 155.6
1913 Female, age 42, unknown 151.8
2587 Male, age 74, left hemisphere 143.6
1995 Male, age 72, unknown 138.4
Ventral tegmental area
nTPM: 129.3
2410 Female, age 72, unknown 149.4
1915 Female, age 42, unknown 133.8
2218 Male, age 76, both hemispheres 133.0
2223 Female, age 72, unknown 127.6
1942 Male, age 51, unknown 123.6
2021 Male, age 53, unknown 108.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 126.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 126.4
Samples: 139

Max nTPM: 365.1
Min nTPM: 56.3
Std nTPM: 40.8
Median nTPM: 120.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 365.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 270.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 214.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 211.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 191.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 191.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 188.9
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 188.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 188.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 184.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 184.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 232.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 232.4
FF:10158-103A5 76 years, female 232.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 168.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 125.7
Samples: 4

Max nTPM: 164.2
Min nTPM: 97.3
Sample A Female 164.2
Sample B Female 97.3
Sample C Male 133.2
Sample D Male 108.2
Midbrain
nTPM: 156.7
Samples: 4

Max nTPM: 218.7
Min nTPM: 108.5
Sample A Female 129.8
Sample B Female 108.5
Sample C Male 218.7
Sample D Male 169.7
Periaqueductal gray
nTPM: 122.1
Samples: 3

Max nTPM: 135.6
Min nTPM: 108.2
Sample B Female 108.2
Sample C Male 135.6
Sample D Male 122.5
Superior colliculi
nTPM: 168.4
Samples: 4

Max nTPM: 201.1
Min nTPM: 119.9
Sample A Female 180.0
Sample B Female 119.9
Sample C Male 201.1
Sample D Male 172.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 117.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 117.8
Samples: 4

Max nTPM: 135.5
Min nTPM: 108.5
Sample A Male 135.5
Sample B Male 108.9
Sample C Female 108.5
Sample D Female 118.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
75214942 Antisense, RP_060427_01_A10, Mouse strain C57BL/6J (56 days, male) 1.1

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