MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:94.3 nTPM
HPA Brain:71.6 nTPM
GTEx:94.3 nTPM
FANTOM5:201.5 Scaled Tags Per Million
Pig:62.0 nTPM
Mouse:134.3 nTPM
Allen mouse:6.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 71.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 63.3
2666 Male, age 74, left hemisphere 75.4
2219 Male, age 76, both hemispheres 72.2
1870 Female, age 42, unknown 67.1
2586 Male, age 75, left hemisphere 65.6
1827 Male, age 72, unknown 65.4
1833 Male, age 53, unknown 60.8
2019 Male, age 18, unknown 58.9
1830 Male, age 51, unknown 58.4
2411 Female, age 72, unknown 58.3
2828 Female, age 72, unknown 51.2
Dorsal raphe nucleus
nTPM: 59.3
1828 Male, age 53, unknown 62.8
2047 Male, age 72, unknown 61.8
2298 Female, age 72, unknown 61.1
2016 Female, age 72, unknown 58.0
2750 Male, age 76, both hemispheres 52.9
Inferior colliculus
nTPM: 62.9
2849 Male, age 72, unknown 78.8
1890 Male, age 53, unknown 63.0
1848 Female, age 42, unknown 59.7
2097 Female, age 72, unknown 50.1
Median raphe nucleus
nTPM: 71.6
2220 Male, age 76, midline 71.6
Periaquaductal grey, anterior
nTPM: 60.5
1947 Male, age 18, unknown 63.3
1795 Male, age 51, unknown 61.9
2502 Female, age 75, unknown 56.3
Periaquaductal grey, dorsal
nTPM: 65.8
2850 Male, age 76, both hemispheres 83.8
1840 Male, age 53, unknown 67.0
2464 Female, age 72, unknown 57.8
1831 Male, age 72, unknown 54.6
Periaquaductal grey, lateral
nTPM: 62.7
2140 Male, age 76, both hemispheres 68.9
2272 Male, age 74, both hemispheres 64.4
2053 Male, age 18, unknown 54.9
Pretectal area
nTPM: 62.4
2007 Male, age 72, unknown 70.5
1817 Female, age 42, unknown 69.5
1816 Male, age 51, unknown 66.0
2667 Female, age 75, unknown 64.0
1944 Female, age 72, unknown 63.9
1815 Male, age 53, unknown 61.7
2224 Female, age 72, unknown 61.0
2825 Male, age 18, unknown 60.8
2407 Male, age 75, both hemispheres 60.5
2273 Male, age 74, both hemispheres 60.3
2316 Male, age 76, right hemisphere 47.8
Red nucleus
nTPM: 62.7
2725 Female, age 75, unknown 79.6
2503 Female, age 72, unknown 68.5
2588 Male, age 74, left hemisphere 65.6
2785 Male, age 18, unknown 65.2
1865 Male, age 51, unknown 63.0
2584 Male, age 75, left hemisphere 60.9
1821 Female, age 72, unknown 60.8
2769 Male, age 72, unknown 60.6
2227 Male, age 72, unknown 60.2
1904 Male, age 53, unknown 57.3
1954 Female, age 42, unknown 56.1
2823 Male, age 76, right hemisphere 54.1
Substantia nigra
nTPM: 61.1
2699 Male, age 18, unknown 73.1
1916 Female, age 42, unknown 72.9
1941 Male, age 53, unknown 68.4
2665 Male, age 74, both hemispheres 65.7
1889 Female, age 72, unknown 62.6
1851 Male, age 51, unknown 61.8
2583 Male, age 75, right hemisphere 57.6
2590 Female, age 75, unknown 49.8
2241 Male, age 72, unknown 49.7
2409 Female, age 72, unknown 49.0
Superior colliculus
nTPM: 58.0
2587 Male, age 74, left hemisphere 62.5
1796 Male, age 53, unknown 61.9
1913 Female, age 42, unknown 60.6
1839 Male, age 51, unknown 58.5
1895 Male, age 76, right hemisphere 57.5
2668 Female, age 75, unknown 57.2
1995 Male, age 72, unknown 57.0
2664 Male, age 75, both hemispheres 56.3
2261 Male, age 18, unknown 54.2
2087 Female, age 72, unknown 54.1
Ventral tegmental area
nTPM: 59.8
1915 Female, age 42, unknown 68.1
2223 Female, age 72, unknown 64.4
2218 Male, age 76, both hemispheres 61.8
2410 Female, age 72, unknown 57.9
1942 Male, age 51, unknown 56.4
2021 Male, age 53, unknown 50.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 94.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 94.3
Samples: 139

Max nTPM: 205.2
Min nTPM: 53.6
Std nTPM: 26.0
Median nTPM: 88.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 205.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 200.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 179.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 173.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 172.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 158.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 152.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 147.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 143.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 141.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 131.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 201.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 201.5
FF:10158-103A5 76 years, female 201.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 62.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 50.8
Samples: 4

Max nTPM: 60.7
Min nTPM: 41.6
Sample A Female 60.7
Sample B Female 41.9
Sample C Male 58.8
Sample D Male 41.6
Midbrain
nTPM: 57.8
Samples: 4

Max nTPM: 60.3
Min nTPM: 54.8
Sample A Female 60.3
Sample B Female 57.9
Sample C Male 58.3
Sample D Male 54.8
Periaqueductal gray
nTPM: 62.0
Samples: 3

Max nTPM: 70.1
Min nTPM: 53.6
Sample B Female 62.3
Sample C Male 70.1
Sample D Male 53.6
Superior colliculi
nTPM: 57.9
Samples: 4

Max nTPM: 64.5
Min nTPM: 42.5
Sample A Female 64.5
Sample B Female 42.5
Sample C Male 62.7
Sample D Male 61.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 134.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 134.3
Samples: 4

Max nTPM: 137.9
Min nTPM: 131.1
Sample A Male 137.9
Sample B Male 131.1
Sample C Female 131.8
Sample D Female 136.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.9
2442 Antisense, RP_Baylor_253947, Mouse strain C57BL/6J (56 days, male) 9.5
68302329 Antisense, RP_041130_02_F06, Mouse strain C57BL/6J (56 days, male) 4.4

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