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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
44.1
nTPM
Monaco:
77.6
nTPM
Schmiedel:
92.3
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
44.1
HPA sample
nTPM
gdT-cell nTPM: 44.1
Samples: 6
Max nTPM: 53.7
Min nTPM: 35.3
P10809_1007
39.8
P10809_1022
47.5
P10809_1041
52.7
P10809_1060
35.3
P10809_1077
35.8
P10809_1098
53.7
MAIT T-cell nTPM: 37.3
Samples: 6
Max nTPM: 51.5
Min nTPM: 22.4
P10809_1006
43.2
P10809_1024
22.4
P10809_1043
37.0
P10809_1062
34.8
P10809_1083
34.8
P10809_1097
51.5
Memory CD4 T-cell nTPM: 23.0
Samples: 6
Max nTPM: 28.0
Min nTPM: 17.6
P10809_1014
23.9
P10809_1026
23.6
P10809_1045
24.0
P10809_1064
20.8
P10809_1086
28.0
P10809_1113
17.6
Memory CD8 T-cell nTPM: 36.5
Samples: 5
Max nTPM: 38.6
Min nTPM: 32.5
P10809_1012
36.7
P10809_1027
32.5
P10809_1046
37.0
P10809_1065
38.6
P10809_1111
37.8
Naive CD4 T-cell nTPM: 21.9
Samples: 6
Max nTPM: 25.2
Min nTPM: 19.8
P10809_1015
21.5
P10809_1030
25.2
P10809_1049
21.1
P10809_1068
20.6
P10809_1085
22.9
P10809_1112
19.8
Naive CD8 T-cell nTPM: 29.3
Samples: 6
Max nTPM: 40.4
Min nTPM: 21.4
P10809_1016
21.4
P10809_1031
25.7
P10809_1050
30.3
P10809_1069
40.4
P10809_1087
26.0
P10809_1110
31.7
T-reg nTPM: 34.0
Samples: 6
Max nTPM: 41.2
Min nTPM: 20.6
P10809_1018
39.1
P10809_1037
36.9
P10809_1056
20.6
P10809_1075
39.8
P10809_1094
26.6
P10809_1106
41.2
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
77.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 30.9
Samples: 4
Max nTPM: 47.2
Min nTPM: 10.6
RHH5202_R3573
10.6
RHH5230_R3602
47.2
RHH5259_R3631
31.2
RHH5288_R3660
34.7
Effector memory CD8 T-cell nTPM: 60.4
Samples: 4
Max nTPM: 89.2
Min nTPM: 20.2
RHH5203_R3574
72.6
RHH5231_R3603
89.2
RHH5260_R3632
59.4
RHH5289_R3661
20.2
MAIT T-cell nTPM: 61.2
Samples: 4
Max nTPM: 73.6
Min nTPM: 51.4
RHH5233_R3605
51.4
RHH5205_R3576
56.8
RHH5262_R3634
73.6
RHH5297_R3663
63.1
Memory CD4 T-cell TFH nTPM: 33.0
Samples: 4
Max nTPM: 65.0
Min nTPM: 10.1
RHH5300_R3666
30.1
RHH5236_R3608
65.0
RHH5265_R3637
26.6
RHH5208_R3579
10.1
Memory CD4 T-cell Th1 nTPM: 35.0
Samples: 4
Max nTPM: 45.5
Min nTPM: 30.0
RHH5210_R3581
32.4
RHH5302_R3668
31.9
RHH5238_R3610
30.0
RHH5267_R3639
45.5
Memory CD4 T-cell Th1/Th17 nTPM: 43.9
Samples: 4
Max nTPM: 89.9
Min nTPM: 18.4
RHH5303_R3669
18.4
RHH5211_R3582
89.9
RHH5239_R3611
32.1
RHH5268_R3640
35.0
Memory CD4 T-cell Th17 nTPM: 32.3
Samples: 4
Max nTPM: 40.9
Min nTPM: 20.0
RHH5304_R3670
20.0
RHH5212_R3583
40.9
RHH5240_R3612
27.9
RHH5269_R3641
40.4
Memory CD4 T-cell Th2 nTPM: 48.4
Samples: 4
Max nTPM: 59.3
Min nTPM: 30.3
RHH5305_R3671
48.4
RHH5213_R3584
59.3
RHH5241_R3613
30.3
RHH5270_R3642
55.4
Naive CD4 T-cell nTPM: 31.1
Samples: 4
Max nTPM: 35.6
Min nTPM: 23.2
RHH5306_R3672
30.5
RHH5214_R3585
34.9
RHH5242_R3614
23.2
RHH5271_R3643
35.6
Naive CD8 T-cell nTPM: 23.5
Samples: 4
Max nTPM: 35.6
Min nTPM: 11.6
RHH5201_R3572
11.6
RHH5229_R3601
18.4
RHH5258_R3630
28.3
RHH5287_R3659
35.6
Non-Vd2 gdTCR nTPM: 69.7
Samples: 4
Max nTPM: 80.5
Min nTPM: 60.7
RHH5235_R3607
80.5
RHH5264_R3636
65.6
RHH5207_R3578
60.7
RHH5299_R3665
71.8
T-reg nTPM: 45.2
Samples: 4
Max nTPM: 53.9
Min nTPM: 33.7
RHH5301_R3667
46.8
RHH5237_R3609
53.9
RHH5266_R3638
33.7
RHH5209_R3580
46.5
Terminal effector memory CD4 T-cell nTPM: 40.2
Samples: 2
Max nTPM: 44.1
Min nTPM: 36.2
RHH5243_R3615
36.2
RHH5272_R3644
44.1
Terminal effector memory CD8 T-cell nTPM: 64.4
Samples: 4
Max nTPM: 88.1
Min nTPM: 30.6
RHH5232_R3604
62.6
RHH5204_R3575
88.1
RHH5261_R3633
76.2
RHH5296_R3662
30.6
Vd2 gdTCR nTPM: 77.6
Samples: 4
Max nTPM: 98.0
Min nTPM: 59.8
RHH5234_R3606
79.3
RHH5206_R3577
98.0
RHH5263_R3635
59.8
RHH5298_R3664
73.2
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
