MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.0 nTPM
HPA Brain:126.1 nTPM
GTEx:28.0 nTPM
FANTOM5:115.3 Scaled Tags Per Million
Pig:38.4 nTPM
Mouse:20.6 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 126.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 121.1
2586 Male, age 75, left hemisphere 151.7
2666 Male, age 74, left hemisphere 143.9
2019 Male, age 18, unknown 136.4
1827 Male, age 72, unknown 124.4
2828 Female, age 72, unknown 121.9
2411 Female, age 72, unknown 120.3
1833 Male, age 53, unknown 109.6
1870 Female, age 42, unknown 105.5
1830 Male, age 51, unknown 102.0
2219 Male, age 76, both hemispheres 95.4
Dorsal raphe nucleus
nTPM: 109.7
2298 Female, age 72, unknown 121.8
1828 Male, age 53, unknown 110.5
2016 Female, age 72, unknown 106.7
2750 Male, age 76, both hemispheres 106.6
2047 Male, age 72, unknown 102.9
Inferior colliculus
nTPM: 103.6
2097 Female, age 72, unknown 114.5
2849 Male, age 72, unknown 101.5
1890 Male, age 53, unknown 101.2
1848 Female, age 42, unknown 97.1
Median raphe nucleus
nTPM: 109.6
2220 Male, age 76, midline 109.6
Periaquaductal grey, anterior
nTPM: 118.1
2502 Female, age 75, unknown 128.8
1795 Male, age 51, unknown 126.3
1947 Male, age 18, unknown 99.3
Periaquaductal grey, dorsal
nTPM: 100.0
2464 Female, age 72, unknown 107.1
1831 Male, age 72, unknown 105.8
1840 Male, age 53, unknown 102.4
2850 Male, age 76, both hemispheres 84.7
Periaquaductal grey, lateral
nTPM: 101.2
2272 Male, age 74, both hemispheres 117.3
2053 Male, age 18, unknown 102.7
2140 Male, age 76, both hemispheres 83.6
Pretectal area
nTPM: 126.1
1816 Male, age 51, unknown 160.6
2007 Male, age 72, unknown 154.4
1817 Female, age 42, unknown 151.1
1944 Female, age 72, unknown 137.5
1815 Male, age 53, unknown 136.3
2407 Male, age 75, both hemispheres 116.2
2273 Male, age 74, both hemispheres 113.6
2224 Female, age 72, unknown 112.7
2825 Male, age 18, unknown 104.9
2667 Female, age 75, unknown 101.3
2316 Male, age 76, right hemisphere 99.2
Red nucleus
nTPM: 112.1
2785 Male, age 18, unknown 138.5
2584 Male, age 75, left hemisphere 130.5
2588 Male, age 74, left hemisphere 117.5
1821 Female, age 72, unknown 116.6
2503 Female, age 72, unknown 113.2
1954 Female, age 42, unknown 112.4
1904 Male, age 53, unknown 107.1
2769 Male, age 72, unknown 106.7
2725 Female, age 75, unknown 106.6
2227 Male, age 72, unknown 106.5
1865 Male, age 51, unknown 96.6
2823 Male, age 76, right hemisphere 93.2
Substantia nigra
nTPM: 119.4
2583 Male, age 75, right hemisphere 138.8
1916 Female, age 42, unknown 133.6
1889 Female, age 72, unknown 126.2
1941 Male, age 53, unknown 124.8
1851 Male, age 51, unknown 124.1
2665 Male, age 74, both hemispheres 122.9
2590 Female, age 75, unknown 108.5
2241 Male, age 72, unknown 108.0
2409 Female, age 72, unknown 103.6
2699 Male, age 18, unknown 103.2
Superior colliculus
nTPM: 121.8
2668 Female, age 75, unknown 154.5
2664 Male, age 75, both hemispheres 137.7
2261 Male, age 18, unknown 134.4
2087 Female, age 72, unknown 126.3
1796 Male, age 53, unknown 120.0
1913 Female, age 42, unknown 115.3
1995 Male, age 72, unknown 115.0
1839 Male, age 51, unknown 114.0
2587 Male, age 74, left hemisphere 103.0
1895 Male, age 76, right hemisphere 97.6
Ventral tegmental area
nTPM: 112.1
2410 Female, age 72, unknown 127.1
1915 Female, age 42, unknown 116.4
1942 Male, age 51, unknown 110.7
2021 Male, age 53, unknown 109.5
2218 Male, age 76, both hemispheres 106.0
2223 Female, age 72, unknown 103.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.0
Samples: 139

Max nTPM: 57.2
Min nTPM: 4.4
Std nTPM: 8.7
Median nTPM: 26.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 57.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 48.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 46.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 46.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 45.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 44.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 44.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 44.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 43.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 43.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 43.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 115.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 115.3
FF:10158-103A5 76 years, female 115.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 38.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.9
Samples: 4

Max nTPM: 37.2
Min nTPM: 24.5
Sample A Female 37.2
Sample B Female 27.7
Sample C Male 34.1
Sample D Male 24.5
Midbrain
nTPM: 34.0
Samples: 4

Max nTPM: 39.7
Min nTPM: 27.9
Sample A Female 39.7
Sample B Female 27.9
Sample C Male 38.5
Sample D Male 29.8
Periaqueductal gray
nTPM: 27.9
Samples: 3

Max nTPM: 30.3
Min nTPM: 25.3
Sample B Female 28.0
Sample C Male 30.3
Sample D Male 25.3
Superior colliculi
nTPM: 38.4
Samples: 4

Max nTPM: 43.4
Min nTPM: 33.2
Sample A Female 43.4
Sample B Female 39.2
Sample C Male 37.8
Sample D Male 33.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.6
Samples: 4

Max nTPM: 21.7
Min nTPM: 19.5
Sample A Male 19.5
Sample B Male 21.7
Sample C Female 20.5
Sample D Female 20.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
68798998 Antisense, RP_050217_01_G09, Mouse strain C57BL/6J (56 days, male) 2.2

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