HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:66.8 nTPM
HPA Brain:15.9 nTPM
GTEx:66.8 nTPM
FANTOM5:134.5 Scaled Tags Per Million
Pig:55.1 nTPM
Mouse:56.7 nTPM
Allen mouse:4.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA006632
Glial cells Low
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 15.9
Sample id Sample description nTPM
Hippocampus
nTPM: 15.8
2529 Female, age 94, left hemisphere 19.0
1898 Male, age 80, left hemisphere 17.4
1855 Male, age 76, left hemisphere 15.5
1911 Female, age 85, right hemisphere 15.3
2148 Female, age 91, left hemisphere 13.8
2621 Female, age 67, right hemisphere 13.8
Dentate gyrus
nTPM: 14.0
2530 Female, age 94, left hemisphere 17.6
2528 Male, age 74, both hemispheres 14.8
2010 Male, age 76, both hemispheres 14.5
2246 Female, age 85, both hemispheres 12.7
1927 Female, age 91, both hemispheres 12.5
2531 Female, age 67, both hemispheres 11.9
Entorhinal gyrus
nTPM: 13.4
2117 Female, age 91, right hemisphere 20.0
1787 Male, age 76, left hemisphere 15.0
1938 Female, age 85, left hemisphere 13.1
2764 Male, age 80, right hemisphere 11.9
2686 Male, age 75, right hemisphere 11.6
2613 Female, age 94, left hemisphere 8.5
Hippocampus, CA1
nTPM: 14.1
2527 Male, age 74, both hemispheres 15.5
2082 Female, age 91, right hemisphere 15.0
2749 Male, age 80, left hemisphere 14.7
1873 Female, age 85, both hemispheres 14.4
2045 Male, age 76, both hemispheres 10.7
Hippocampus, CA2
nTPM: 15.9
1940 Female, age 85, left hemisphere 17.7
2249 Male, age 74, both hemispheres 17.2
1892 Male, age 76, both hemispheres 15.6
2113 Female, age 91, right hemisphere 15.4
1963 Male, age 80, left hemisphere 15.0
2437 Female, age 94, left hemisphere 14.9
Hippocampus, CA3
nTPM: 12.6
1867 Male, age 76, both hemispheres 15.3
1891 Female, age 85, both hemispheres 14.7
2436 Male, age 74, both hemispheres 13.7
2137 Male, age 80, left hemisphere 11.6
2861 Female, age 67, both hemispheres 11.4
2620 Female, age 94, left hemisphere 9.1
Parahippocampal cortex
nTPM: 13.3
2250 Female, age 67, right hemisphere 16.0
2018 Male, age 76, both hemispheres 15.6
1990 Female, age 91, right hemisphere 14.8
1933 Female, age 85, both hemispheres 14.5
2245 Female, age 91, both hemispheres 14.2
1850 Male, age 80, both hemispheres 13.4
2532 Female, age 72, left hemisphere 11.8
2692 Male, age 74, both hemispheres 11.6
2693 Female, age 94, both hemispheres 11.0
2622 Female, age 67, right hemisphere 10.1
Perirhinal gyrus
nTPM: 13.3
1841 Female, age 85, right hemisphere 14.1
2521 Female, age 94, right hemisphere 13.7
1794 Male, age 80, right hemisphere 12.9
2848 Male, age 76, right hemisphere 12.9
1847 Female, age 91, left hemisphere 12.8
Subiculum
nTPM: 14.9
2042 Male, age 76, both hemispheres 17.2
2729 Female, age 91, right hemisphere 15.4
1901 Male, age 80, both hemispheres 14.8
1977 Female, age 85, both hemispheres 14.4
2619 Male, age 74, both hemispheres 14.2
2438 Female, age 94, left hemisphere 13.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 66.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 66.8
Samples: 197

Max nTPM: 175.5
Min nTPM: 40.2
Std nTPM: 15.8
Median nTPM: 64.7
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 175.5
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 157.1
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 105.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 102.6
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 99.1
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 98.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 97.6
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 96.4
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 94.0
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 90.4
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 89.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 134.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 134.5
FF:10169-103B7 60 years, female 163.0
FF:10153-102I9 76 years, female 106.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 55.1
Pig sample Sample description nTPM
Subiculum
nTPM: 52.4
Samples: 4

Max nTPM: 70.5
Min nTPM: 45.6
Sample A Female 70.5
Sample B Female 45.6
Sample C Male 45.6
Sample D Male 47.9
Dorsal hippocampus
nTPM: 47.2
Samples: 4

Max nTPM: 62.8
Min nTPM: 36.9
Sample A Female 62.8
Sample B Female 43.5
Sample C Male 45.6
Sample D Male 36.9
Entorhinal cortex
nTPM: 41.2
Samples: 4

Max nTPM: 49.1
Min nTPM: 34.2
Sample A Female 49.1
Sample B Female 40.2
Sample C Male 41.3
Sample D Male 34.2
Ventral hippocampus
nTPM: 55.1
Samples: 4

Max nTPM: 68.0
Min nTPM: 43.0
Sample A Female 58.6
Sample B Female 43.0
Sample C Male 68.0
Sample D Male 50.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 56.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 51.7
Samples: 4

Max nTPM: 54.2
Min nTPM: 48.6
Sample A Male 48.6
Sample B Male 52.1
Sample C Female 51.9
Sample D Female 54.2
Hippocampal formation
nTPM: 56.7
Samples: 4

Max nTPM: 64.1
Min nTPM: 39.7
Sample A Male 64.1
Sample B Male 60.9
Sample C Female 39.7
Sample D Female 61.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.3
76115739 Antisense, RP_060620_02_C07, Mouse strain C57BL/6J (56 days, male) 4.8
69816715 Antisense, RP_050510_01_G02, Mouse strain C57BL/6J (56 days, male) 3.9

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