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RPGRIP1
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  • RPGRIP1
PROTEIN SUMMARY SECTION OVERVIEW GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

RPGRIP1
Synonyms CORD13, LCA6, RGI1, RPGRIP
Gene descriptioni

Full gene name according to HGNC.

RPGR interacting protein 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 14
Cytoband q11.2
Chromosome location (bp) 21280083 - 21351301
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

8
Ensembl ENSG00000092200 (version 109)
Entrez gene 57096
HGNC HGNC:13436
UniProt Q96KN7 (UniProt - Evidence at protein level)
neXtProt NX_Q96KN7
GeneCards RPGRIP1
Antibodypedia RPGRIP1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

May function as scaffolding protein. Required for normal location of RPGR at the connecting cilium of photoreceptor cells. Required for normal disk morphogenesis and disk organization in the outer segment of photoreceptor cells and for survival of photoreceptor cells.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Sensory transduction, Vision
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a photoreceptor protein that interacts with retinitis pigmentosa GTPase regulator protein and is a key component of cone and rod photoreceptor cells. Mutations in this gene lead to autosomal recessive congenital blindness. [provided by RefSeq, Oct 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
RPGRIP1-201
ENSP00000372391
ENST00000382933
Q96KN7
[Direct mapping] X-linked retinitis pigmentosa GTPase regulator-interacting protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Nervous system diseases
   Eye disease
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0005515 [protein binding]
GO:0005929 [cilium]
GO:0007601 [visual perception]
GO:0032391 [photoreceptor connecting cilium]
GO:0035869 [ciliary transition zone]
GO:0042462 [eye photoreceptor cell development]
GO:0042995 [cell projection]
GO:0046548 [retinal rod cell development]
GO:0050896 [response to stimulus]
GO:1905515 [non-motile cilium assembly]
Show all
612 aa
70.1 kDa
No 0
RPGRIP1-202
ENSP00000382895
ENST00000400017
Q96KN7
[Direct mapping] X-linked retinitis pigmentosa GTPase regulator-interacting protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Nervous system diseases
   Eye disease
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005929 [cilium]
GO:0005930 [axoneme]
GO:0007601 [visual perception]
GO:0032391 [photoreceptor connecting cilium]
GO:0035869 [ciliary transition zone]
GO:0042462 [eye photoreceptor cell development]
GO:0042995 [cell projection]
GO:0043005 [neuron projection]
GO:0046548 [retinal rod cell development]
GO:0050896 [response to stimulus]
GO:0060041 [retina development in camera-type eye]
GO:0061351 [neural precursor cell proliferation]
GO:0097730 [non-motile cilium]
GO:0120206 [photoreceptor distal connecting cilium]
GO:1905515 [non-motile cilium assembly]
Show all
1286 aa
146.7 kDa
No 0
RPGRIP1-205
ENSP00000450426
ENST00000554303
H0YIY1
[Direct mapping] X-linked retinitis pigmentosa GTPase regulator-interacting protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Eye disease
Show all
GO:0005929 [cilium]
GO:0007601 [visual perception]
GO:0032391 [photoreceptor connecting cilium]
GO:0042462 [eye photoreceptor cell development]
GO:0042995 [cell projection]
Show all
143 aa
16.4 kDa
No 0
RPGRIP1-209
ENSP00000451262
ENST00000555587
G3V3I7
[Direct mapping] X-linked retinitis pigmentosa GTPase regulator-interacting protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Eye disease
Show all
GO:0005929 [cilium]
GO:0007601 [visual perception]
GO:0032391 [photoreceptor connecting cilium]
GO:0042462 [eye photoreceptor cell development]
GO:0042995 [cell projection]
Show all
761 aa
87 kDa
No 0
RPGRIP1-210
ENSP00000450445
ENST00000556336
G3V236
[Direct mapping] X-linked retinitis pigmentosa GTPase regulator-interacting protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Eye disease
Show all
GO:0007601 [visual perception]
GO:0032391 [photoreceptor connecting cilium]
GO:0042462 [eye photoreceptor cell development]
Show all
943 aa
108.1 kDa
No 0
RPGRIP1-211
ENSP00000452215
ENST00000557351
G3V577
[Direct mapping] X-linked retinitis pigmentosa GTPase regulator-interacting protein 1
Show all
   SCAMPI predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Eye disease
Show all
GO:0007601 [visual perception]
GO:0032391 [photoreceptor connecting cilium]
GO:0042462 [eye photoreceptor cell development]
Show all
166 aa
18.6 kDa
No 0
RPGRIP1-212
ENSP00000451719
ENST00000557606
H0YJK6
[Direct mapping] X-linked retinitis pigmentosa GTPase regulator-interacting protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Eye disease
Show all
GO:0007601 [visual perception]
GO:0032391 [photoreceptor connecting cilium]
GO:0042462 [eye photoreceptor cell development]
Show all
134 aa
15.1 kDa
No 0
RPGRIP1-213
ENSP00000451219
ENST00000557771
G3V3F7
[Direct mapping] X-linked retinitis pigmentosa GTPase regulator-interacting protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Eye disease
Show all
GO:0005929 [cilium]
GO:0007601 [visual perception]
GO:0032391 [photoreceptor connecting cilium]
GO:0042462 [eye photoreceptor cell development]
GO:0042995 [cell projection]
Show all
1248 aa
142.8 kDa
No 0

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