MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.3 nTPM
HPA Brain:11.5 nTPM
GTEx:21.3 nTPM
FANTOM5:40.0 Scaled Tags Per Million
Pig:19.4 nTPM
Mouse:7.8 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 11.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.9
2411 Female, age 72, unknown 12.5
1870 Female, age 42, unknown 12.2
2019 Male, age 18, unknown 12.2
1827 Male, age 72, unknown 11.8
2586 Male, age 75, left hemisphere 11.6
2666 Male, age 74, left hemisphere 11.6
1833 Male, age 53, unknown 10.3
2828 Female, age 72, unknown 9.7
1830 Male, age 51, unknown 8.8
2219 Male, age 76, both hemispheres 7.8
Dorsal raphe nucleus
nTPM: 10.2
2047 Male, age 72, unknown 10.5
2298 Female, age 72, unknown 10.3
1828 Male, age 53, unknown 10.2
2016 Female, age 72, unknown 10.2
2750 Male, age 76, both hemispheres 9.9
Inferior colliculus
nTPM: 9.3
2097 Female, age 72, unknown 10.1
1890 Male, age 53, unknown 9.9
2849 Male, age 72, unknown 8.6
1848 Female, age 42, unknown 8.5
Median raphe nucleus
nTPM: 9.5
2220 Male, age 76, midline 9.5
Periaquaductal grey, anterior
nTPM: 9.3
2502 Female, age 75, unknown 10.4
1947 Male, age 18, unknown 9.5
1795 Male, age 51, unknown 8.1
Periaquaductal grey, dorsal
nTPM: 10.0
2850 Male, age 76, both hemispheres 11.2
1831 Male, age 72, unknown 10.4
2464 Female, age 72, unknown 10.2
1840 Male, age 53, unknown 8.1
Periaquaductal grey, lateral
nTPM: 9.6
2140 Male, age 76, both hemispheres 11.1
2053 Male, age 18, unknown 9.5
2272 Male, age 74, both hemispheres 8.2
Pretectal area
nTPM: 10.1
1815 Male, age 53, unknown 11.5
1817 Female, age 42, unknown 11.1
2825 Male, age 18, unknown 11.1
1816 Male, age 51, unknown 10.8
2007 Male, age 72, unknown 10.5
2316 Male, age 76, right hemisphere 10.3
1944 Female, age 72, unknown 10.2
2407 Male, age 75, both hemispheres 9.5
2667 Female, age 75, unknown 9.4
2273 Male, age 74, both hemispheres 8.4
2224 Female, age 72, unknown 7.7
Red nucleus
nTPM: 11.5
1821 Female, age 72, unknown 17.1
1904 Male, age 53, unknown 13.5
1865 Male, age 51, unknown 13.3
1954 Female, age 42, unknown 12.7
2503 Female, age 72, unknown 11.7
2588 Male, age 74, left hemisphere 10.5
2785 Male, age 18, unknown 10.4
2227 Male, age 72, unknown 10.3
2725 Female, age 75, unknown 9.8
2823 Male, age 76, right hemisphere 9.7
2769 Male, age 72, unknown 9.6
2584 Male, age 75, left hemisphere 8.9
Substantia nigra
nTPM: 10.5
1889 Female, age 72, unknown 12.8
1916 Female, age 42, unknown 11.3
1851 Male, age 51, unknown 11.2
2590 Female, age 75, unknown 11.1
2241 Male, age 72, unknown 10.6
2665 Male, age 74, both hemispheres 10.4
1941 Male, age 53, unknown 10.0
2699 Male, age 18, unknown 9.7
2583 Male, age 75, right hemisphere 9.2
2409 Female, age 72, unknown 8.8
Superior colliculus
nTPM: 10.7
1839 Male, age 51, unknown 12.8
1913 Female, age 42, unknown 12.7
1995 Male, age 72, unknown 11.5
1796 Male, age 53, unknown 11.2
2668 Female, age 75, unknown 10.8
1895 Male, age 76, right hemisphere 10.6
2587 Male, age 74, left hemisphere 10.4
2261 Male, age 18, unknown 9.6
2664 Male, age 75, both hemispheres 8.9
2087 Female, age 72, unknown 8.2
Ventral tegmental area
nTPM: 10.7
2410 Female, age 72, unknown 14.9
1915 Female, age 42, unknown 10.9
2223 Female, age 72, unknown 10.4
2218 Male, age 76, both hemispheres 10.2
2021 Male, age 53, unknown 9.0
1942 Male, age 51, unknown 8.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.3
Samples: 139

Max nTPM: 35.6
Min nTPM: 12.8
Std nTPM: 4.5
Median nTPM: 19.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 35.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 34.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 34.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 33.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 33.5
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 30.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 30.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 30.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 29.3
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 29.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 28.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 40.0
FF:10158-103A5 76 years, female 40.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.7
Samples: 4

Max nTPM: 18.2
Min nTPM: 17.5
Sample A Female 18.2
Sample B Female 17.5
Sample C Male 17.6
Sample D Male 17.6
Midbrain
nTPM: 17.3
Samples: 4

Max nTPM: 20.0
Min nTPM: 15.5
Sample A Female 20.0
Sample B Female 16.6
Sample C Male 16.9
Sample D Male 15.5
Periaqueductal gray
nTPM: 16.2
Samples: 3

Max nTPM: 17.3
Min nTPM: 15.4
Sample B Female 15.9
Sample C Male 17.3
Sample D Male 15.4
Superior colliculi
nTPM: 19.4
Samples: 4

Max nTPM: 21.2
Min nTPM: 18.1
Sample A Female 20.0
Sample B Female 21.2
Sample C Male 18.4
Sample D Male 18.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.8
Samples: 4

Max nTPM: 8.9
Min nTPM: 6.3
Sample A Male 8.9
Sample B Male 8.6
Sample C Female 6.3
Sample D Female 7.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
77620425 Antisense, RP_070205_01_H06, Mouse strain C57BL/6J (56 days, male) 0.6
77414587 Antisense, RP_070205_01_H06, Mouse strain C57BL/6J (56 days, male) 0.1
71991804 Antisense, RP_051012_03_E05, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org