HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:17.2 nTPM
HPA Brain:82.6 nTPM
GTEx:17.2 nTPM
FANTOM5:59.8 Scaled Tags Per Million
Pig:49.4 nTPM
Mouse:77.1 nTPM
Allen mouse:8.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA071245
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 82.6
Sample id Sample description nTPM
Hippocampus
nTPM: 46.5
1911 Female, age 85, right hemisphere 55.2
1898 Male, age 80, left hemisphere 51.1
2529 Female, age 94, left hemisphere 50.9
2621 Female, age 67, right hemisphere 43.9
2148 Female, age 91, left hemisphere 38.9
1855 Male, age 76, left hemisphere 38.7
Dentate gyrus
nTPM: 42.3
2246 Female, age 85, both hemispheres 49.3
2528 Male, age 74, both hemispheres 44.1
2530 Female, age 94, left hemisphere 43.1
2531 Female, age 67, both hemispheres 42.2
1927 Female, age 91, both hemispheres 39.0
2010 Male, age 76, both hemispheres 35.8
Entorhinal gyrus
nTPM: 81.3
2613 Female, age 94, left hemisphere 109.8
2764 Male, age 80, right hemisphere 94.9
1938 Female, age 85, left hemisphere 83.1
1787 Male, age 76, left hemisphere 78.4
2117 Female, age 91, right hemisphere 64.4
2686 Male, age 75, right hemisphere 57.2
Hippocampus, CA1
nTPM: 51.7
2749 Male, age 80, left hemisphere 77.8
2082 Female, age 91, right hemisphere 54.7
2527 Male, age 74, both hemispheres 51.8
1873 Female, age 85, both hemispheres 42.4
2045 Male, age 76, both hemispheres 31.8
Hippocampus, CA2
nTPM: 52.9
1940 Female, age 85, left hemisphere 67.8
2113 Female, age 91, right hemisphere 58.5
2249 Male, age 74, both hemispheres 54.4
2437 Female, age 94, left hemisphere 49.3
1963 Male, age 80, left hemisphere 44.2
1892 Male, age 76, both hemispheres 43.1
Hippocampus, CA3
nTPM: 54.2
2137 Male, age 80, left hemisphere 93.8
1891 Female, age 85, both hemispheres 56.0
1867 Male, age 76, both hemispheres 54.2
2436 Male, age 74, both hemispheres 41.6
2861 Female, age 67, both hemispheres 41.5
2620 Female, age 94, left hemisphere 38.3
Parahippocampal cortex
nTPM: 68.1
1850 Male, age 80, both hemispheres 92.0
2532 Female, age 72, left hemisphere 76.4
1933 Female, age 85, both hemispheres 75.5
2693 Female, age 94, both hemispheres 72.8
1990 Female, age 91, right hemisphere 68.8
2018 Male, age 76, both hemispheres 65.7
2622 Female, age 67, right hemisphere 59.8
2245 Female, age 91, both hemispheres 58.1
2692 Male, age 74, both hemispheres 58.1
2250 Female, age 67, right hemisphere 53.8
Perirhinal gyrus
nTPM: 82.6
1794 Male, age 80, right hemisphere 101.4
2521 Female, age 94, right hemisphere 86.6
1841 Female, age 85, right hemisphere 82.7
1847 Female, age 91, left hemisphere 79.8
2848 Male, age 76, right hemisphere 62.7
Subiculum
nTPM: 60.4
1901 Male, age 80, both hemispheres 75.5
1977 Female, age 85, both hemispheres 74.0
2042 Male, age 76, both hemispheres 67.7
2619 Male, age 74, both hemispheres 55.7
2729 Female, age 91, right hemisphere 44.9
2438 Female, age 94, left hemisphere 44.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 17.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 17.2
Samples: 197

Max nTPM: 42.7
Min nTPM: 4.7
Std nTPM: 6.7
Median nTPM: 15.7
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 42.7
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 38.0
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 37.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 35.5
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 34.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 31.2
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 30.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 30.2
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 29.9
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 29.2
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 28.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 59.8
FF:10153-102I9 76 years, female 84.3
FF:10169-103B7 60 years, female 35.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 49.4
Pig sample Sample description nTPM
Subiculum
nTPM: 40.2
Samples: 4

Max nTPM: 49.3
Min nTPM: 34.2
Sample A Female 49.3
Sample B Female 40.7
Sample C Male 36.7
Sample D Male 34.2
Dorsal hippocampus
nTPM: 49.4
Samples: 4

Max nTPM: 67.4
Min nTPM: 23.5
Sample A Female 67.4
Sample B Female 55.4
Sample C Male 51.2
Sample D Male 23.5
Entorhinal cortex
nTPM: 40.4
Samples: 4

Max nTPM: 48.8
Min nTPM: 33.4
Sample A Female 44.2
Sample B Female 35.0
Sample C Male 48.8
Sample D Male 33.4
Ventral hippocampus
nTPM: 45.7
Samples: 4

Max nTPM: 81.2
Min nTPM: 23.3
Sample A Female 38.6
Sample B Female 23.3
Sample C Male 39.6
Sample D Male 81.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 77.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 77.1
Samples: 4

Max nTPM: 82.4
Min nTPM: 68.0
Sample A Male 76.8
Sample B Male 82.4
Sample C Female 68.0
Sample D Female 81.0
Hippocampal formation
nTPM: 48.8
Samples: 4

Max nTPM: 50.0
Min nTPM: 47.4
Sample A Male 48.8
Sample B Male 47.4
Sample C Female 48.8
Sample D Female 50.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.8
69201612 Antisense, RP_050317_03_C05, Mouse strain C57BL/6J (56 days, male) 10.3
72119607 Antisense, RP_051017_04_A11, Mouse strain C57BL/6J (56 days, male) 7.2

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