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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:54.8 nTPM
HPA:54.8 nTPM
GTEx:34.9 nTPM
FANTOM5:144.6 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA001214Antibody CAB037083Antibody CAB037317
Glandular cells MediumHighMedium





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPM 54.8
overview
Male, age 65
Small intestine sample 232
nTPM: 54.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 57.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 53
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 54.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 34.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 34.9
Samples: 187

Max nTPM: 76.7
Min nTPM: 21.1
Std nTPM: 6.6
Median nTPM: 34.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 76.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 55.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 48.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 47.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 47.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 46.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 46.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 46.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 46.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 44.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 44.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 44.0
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 43.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 43.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 43.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 43.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 43.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 43.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 42.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 42.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 42.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 42.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 41.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 41.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 41.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 41.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 41.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 41.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 41.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 40.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 40.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 40.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 40.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 40.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 40.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 39.9
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 39.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 39.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 39.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 39.7
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 39.5
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 39.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 39.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 39.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 39.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 39.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 39.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 38.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 38.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 38.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 38.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 38.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 38.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 38.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 38.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 38.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 37.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 37.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 37.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 37.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 37.3
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 37.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 37.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 37.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 37.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 36.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 36.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 36.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 36.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 36.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 36.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 36.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 36.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 36.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 36.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 35.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 35.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 35.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 35.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 35.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 35.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 35.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 35.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 35.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 35.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 35.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 35.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 34.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 34.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 34.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 34.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 34.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 34.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 34.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 34.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 34.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 34.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 33.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 33.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 33.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 33.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 33.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 33.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 33.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 33.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 33.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 33.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 33.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 33.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 33.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 33.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 33.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 33.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 32.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 32.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 32.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 32.8
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 32.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 32.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 32.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 32.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 32.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 31.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 31.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 31.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 31.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 31.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 31.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 31.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 31.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 31.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 30.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 30.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 30.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 30.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 30.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 30.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 30.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 30.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 30.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 30.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 30.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 30.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 29.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 29.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 29.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 29.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 29.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 29.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 29.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 29.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 28.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 28.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 28.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 28.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 28.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 28.6
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 28.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 28.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 28.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 28.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 28.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 28.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 28.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 28.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 28.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 27.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 27.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 27.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 27.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 27.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 26.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 26.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 26.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 26.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 25.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 25.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 25.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 25.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 24.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 23.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 23.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 23.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 23.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 22.8
GTEX-1192X-2526-SM-59868 50-59 years, male 22.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 21.1
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 144.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 144.6
FF:10024-101D6 15,40,85 years, mixed 144.6

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