MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.2 nTPM
HPA Brain:31.7 nTPM
GTEx:31.2 nTPM
FANTOM5:49.5 Scaled Tags Per Million
Pig:48.6 nTPM
Mouse:10.2 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.0
2666 Male, age 74, left hemisphere 29.7
2019 Male, age 18, unknown 22.0
1830 Male, age 51, unknown 21.6
2828 Female, age 72, unknown 21.1
1833 Male, age 53, unknown 18.5
2411 Female, age 72, unknown 16.1
1827 Male, age 72, unknown 14.4
1870 Female, age 42, unknown 13.7
2586 Male, age 75, left hemisphere 11.9
2219 Male, age 76, both hemispheres 11.2
Dorsal raphe nucleus
nTPM: 22.5
2016 Female, age 72, unknown 26.3
2750 Male, age 76, both hemispheres 24.5
2298 Female, age 72, unknown 24.4
1828 Male, age 53, unknown 21.2
2047 Male, age 72, unknown 15.9
Inferior colliculus
nTPM: 14.9
2097 Female, age 72, unknown 17.4
1890 Male, age 53, unknown 15.5
1848 Female, age 42, unknown 15.2
2849 Male, age 72, unknown 11.7
Median raphe nucleus
nTPM: 17.9
2220 Male, age 76, midline 17.9
Periaquaductal grey, anterior
nTPM: 14.7
1795 Male, age 51, unknown 19.4
1947 Male, age 18, unknown 15.8
2502 Female, age 75, unknown 9.0
Periaquaductal grey, dorsal
nTPM: 18.1
1831 Male, age 72, unknown 26.0
2850 Male, age 76, both hemispheres 16.7
2464 Female, age 72, unknown 14.9
1840 Male, age 53, unknown 14.8
Periaquaductal grey, lateral
nTPM: 21.9
2272 Male, age 74, both hemispheres 26.8
2053 Male, age 18, unknown 19.6
2140 Male, age 76, both hemispheres 19.4
Pretectal area
nTPM: 16.2
2273 Male, age 74, both hemispheres 23.7
2316 Male, age 76, right hemisphere 22.8
2407 Male, age 75, both hemispheres 20.4
1817 Female, age 42, unknown 17.5
1815 Male, age 53, unknown 17.1
2007 Male, age 72, unknown 17.1
2825 Male, age 18, unknown 14.5
1944 Female, age 72, unknown 14.1
2224 Female, age 72, unknown 13.8
1816 Male, age 51, unknown 8.7
2667 Female, age 75, unknown 8.4
Red nucleus
nTPM: 21.4
2725 Female, age 75, unknown 28.2
1865 Male, age 51, unknown 28.0
2503 Female, age 72, unknown 26.6
2823 Male, age 76, right hemisphere 26.1
2769 Male, age 72, unknown 22.9
2227 Male, age 72, unknown 21.9
1904 Male, age 53, unknown 20.7
2785 Male, age 18, unknown 20.4
2584 Male, age 75, left hemisphere 18.3
1821 Female, age 72, unknown 17.4
1954 Female, age 42, unknown 16.8
2588 Male, age 74, left hemisphere 9.4
Substantia nigra
nTPM: 31.7
2590 Female, age 75, unknown 70.3
2583 Male, age 75, right hemisphere 35.6
2409 Female, age 72, unknown 32.6
2699 Male, age 18, unknown 31.6
2665 Male, age 74, both hemispheres 30.5
1916 Female, age 42, unknown 29.1
1851 Male, age 51, unknown 27.9
1941 Male, age 53, unknown 23.4
2241 Male, age 72, unknown 22.6
1889 Female, age 72, unknown 13.5
Superior colliculus
nTPM: 21.2
1913 Female, age 42, unknown 39.8
2587 Male, age 74, left hemisphere 29.4
1995 Male, age 72, unknown 28.2
2664 Male, age 75, both hemispheres 18.1
2087 Female, age 72, unknown 18.0
1796 Male, age 53, unknown 17.0
2668 Female, age 75, unknown 16.3
1839 Male, age 51, unknown 15.9
2261 Male, age 18, unknown 15.5
1895 Male, age 76, right hemisphere 13.3
Ventral tegmental area
nTPM: 26.1
2021 Male, age 53, unknown 37.5
1915 Female, age 42, unknown 26.6
1942 Male, age 51, unknown 25.2
2410 Female, age 72, unknown 24.6
2223 Female, age 72, unknown 22.9
2218 Male, age 76, both hemispheres 19.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.2
Samples: 139

Max nTPM: 170.9
Min nTPM: 2.5
Std nTPM: 26.4
Median nTPM: 25.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 170.9
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 113.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 107.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 104.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 102.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 100.4
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 95.0
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 93.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 78.2
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 76.1
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 75.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.5
FF:10158-103A5 76 years, female 49.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 48.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 48.6
Samples: 4

Max nTPM: 59.4
Min nTPM: 44.0
Sample A Female 44.0
Sample B Female 44.7
Sample C Male 46.1
Sample D Male 59.4
Midbrain
nTPM: 40.7
Samples: 4

Max nTPM: 75.6
Min nTPM: 19.7
Sample A Female 75.6
Sample B Female 42.2
Sample C Male 19.7
Sample D Male 25.2
Periaqueductal gray
nTPM: 40.7
Samples: 3

Max nTPM: 41.1
Min nTPM: 40.1
Sample B Female 41.0
Sample C Male 41.1
Sample D Male 40.1
Superior colliculi
nTPM: 31.1
Samples: 4

Max nTPM: 36.3
Min nTPM: 19.9
Sample A Female 36.3
Sample B Female 19.9
Sample C Male 33.0
Sample D Male 35.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.2
Samples: 4

Max nTPM: 11.9
Min nTPM: 8.7
Sample A Male 11.9
Sample B Male 8.7
Sample C Female 9.8
Sample D Female 10.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
67870433 Antisense, RP_041018_01_D02, Mouse strain C57BL/6J (56 days, male) 0.5
71664133 Antisense, RP_050927_04_G04, Mouse strain C57BL/6J (56 days, male) 0.2

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