MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.1 nTPM
HPA Brain:31.8 nTPM
GTEx:34.1 nTPM
FANTOM5:23.8 Scaled Tags Per Million
Pig:102.9 nTPM
Mouse:90.4 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.0
2586 Male, age 75, left hemisphere 34.0
2828 Female, age 72, unknown 26.9
2019 Male, age 18, unknown 26.8
1827 Male, age 72, unknown 26.3
1870 Female, age 42, unknown 26.3
1833 Male, age 53, unknown 25.5
1830 Male, age 51, unknown 25.1
2411 Female, age 72, unknown 25.1
2666 Male, age 74, left hemisphere 22.6
2219 Male, age 76, both hemispheres 21.5
Dorsal raphe nucleus
nTPM: 26.7
2047 Male, age 72, unknown 27.9
2298 Female, age 72, unknown 27.3
2750 Male, age 76, both hemispheres 27.2
1828 Male, age 53, unknown 26.3
2016 Female, age 72, unknown 24.9
Inferior colliculus
nTPM: 24.9
2849 Male, age 72, unknown 25.3
1890 Male, age 53, unknown 25.2
2097 Female, age 72, unknown 24.9
1848 Female, age 42, unknown 24.0
Median raphe nucleus
nTPM: 31.8
2220 Male, age 76, midline 31.8
Periaquaductal grey, anterior
nTPM: 25.0
1795 Male, age 51, unknown 26.2
1947 Male, age 18, unknown 24.6
2502 Female, age 75, unknown 24.4
Periaquaductal grey, dorsal
nTPM: 21.3
1831 Male, age 72, unknown 22.5
2850 Male, age 76, both hemispheres 21.8
1840 Male, age 53, unknown 21.1
2464 Female, age 72, unknown 20.0
Periaquaductal grey, lateral
nTPM: 21.7
2053 Male, age 18, unknown 24.1
2272 Male, age 74, both hemispheres 21.3
2140 Male, age 76, both hemispheres 19.8
Pretectal area
nTPM: 27.3
1817 Female, age 42, unknown 34.1
2007 Male, age 72, unknown 32.8
1816 Male, age 51, unknown 28.6
1815 Male, age 53, unknown 28.4
2667 Female, age 75, unknown 28.3
1944 Female, age 72, unknown 27.4
2407 Male, age 75, both hemispheres 27.3
2224 Female, age 72, unknown 25.7
2273 Male, age 74, both hemispheres 23.6
2825 Male, age 18, unknown 23.2
2316 Male, age 76, right hemisphere 21.0
Red nucleus
nTPM: 26.7
1821 Female, age 72, unknown 30.1
2725 Female, age 75, unknown 29.5
2823 Male, age 76, right hemisphere 28.7
1865 Male, age 51, unknown 28.4
2785 Male, age 18, unknown 27.5
1954 Female, age 42, unknown 26.1
2769 Male, age 72, unknown 25.9
1904 Male, age 53, unknown 25.8
2584 Male, age 75, left hemisphere 25.2
2503 Female, age 72, unknown 25.0
2588 Male, age 74, left hemisphere 25.0
2227 Male, age 72, unknown 23.4
Substantia nigra
nTPM: 29.8
1916 Female, age 42, unknown 40.8
1851 Male, age 51, unknown 32.2
2409 Female, age 72, unknown 32.2
2699 Male, age 18, unknown 31.6
1941 Male, age 53, unknown 29.6
1889 Female, age 72, unknown 28.7
2665 Male, age 74, both hemispheres 26.2
2583 Male, age 75, right hemisphere 25.9
2241 Male, age 72, unknown 25.6
2590 Female, age 75, unknown 24.9
Superior colliculus
nTPM: 25.1
2664 Male, age 75, both hemispheres 28.9
1796 Male, age 53, unknown 27.1
2668 Female, age 75, unknown 26.2
2587 Male, age 74, left hemisphere 25.7
1913 Female, age 42, unknown 25.4
1995 Male, age 72, unknown 24.3
2087 Female, age 72, unknown 24.3
2261 Male, age 18, unknown 23.2
1895 Male, age 76, right hemisphere 23.0
1839 Male, age 51, unknown 22.4
Ventral tegmental area
nTPM: 28.6
2218 Male, age 76, both hemispheres 32.7
1915 Female, age 42, unknown 30.7
2410 Female, age 72, unknown 28.6
2223 Female, age 72, unknown 27.8
2021 Male, age 53, unknown 26.3
1942 Male, age 51, unknown 25.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.1
Samples: 139

Max nTPM: 63.6
Min nTPM: 20.2
Std nTPM: 7.8
Median nTPM: 32.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 63.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 54.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 52.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 51.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 50.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 50.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 48.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 47.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 46.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 46.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 46.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.8
FF:10158-103A5 76 years, female 23.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 102.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 84.9
Samples: 4

Max nTPM: 103.6
Min nTPM: 67.1
Sample A Female 103.6
Sample B Female 67.1
Sample C Male 89.3
Sample D Male 79.5
Midbrain
nTPM: 90.6
Samples: 4

Max nTPM: 94.7
Min nTPM: 84.4
Sample A Female 94.7
Sample B Female 84.4
Sample C Male 93.2
Sample D Male 90.1
Periaqueductal gray
nTPM: 70.6
Samples: 3

Max nTPM: 81.5
Min nTPM: 63.8
Sample B Female 66.6
Sample C Male 81.5
Sample D Male 63.8
Superior colliculi
nTPM: 103.0
Samples: 4

Max nTPM: 114.2
Min nTPM: 98.2
Sample A Female 114.2
Sample B Female 98.3
Sample C Male 101.1
Sample D Male 98.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 90.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 90.5
Samples: 4

Max nTPM: 98.9
Min nTPM: 87.2
Sample A Male 98.9
Sample B Male 87.2
Sample C Female 88.0
Sample D Female 87.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
71662900 Antisense, RP_050927_04_F04, Mouse strain C57BL/6J (56 days, male) 2.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org