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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
87.2
nTPM
Monaco:
58.3
nTPM
Schmiedel:
23.5
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
87.2
HPA sample
nTPM
gdT-cell nTPM: 79.4
Samples: 6
Max nTPM: 106.4
Min nTPM: 51.0
P10809_1007
51.0
P10809_1022
93.1
P10809_1041
106.4
P10809_1060
72.3
P10809_1077
78.1
P10809_1098
75.2
MAIT T-cell nTPM: 75.0
Samples: 6
Max nTPM: 88.8
Min nTPM: 49.6
P10809_1006
49.6
P10809_1024
88.8
P10809_1043
73.3
P10809_1062
81.9
P10809_1083
78.3
P10809_1097
78.1
Memory CD4 T-cell nTPM: 73.8
Samples: 6
Max nTPM: 89.1
Min nTPM: 53.7
P10809_1014
53.7
P10809_1026
89.1
P10809_1045
74.7
P10809_1064
78.0
P10809_1086
70.7
P10809_1113
76.8
Memory CD8 T-cell nTPM: 76.0
Samples: 5
Max nTPM: 105.5
Min nTPM: 45.8
P10809_1012
45.8
P10809_1027
105.5
P10809_1046
82.8
P10809_1065
77.9
P10809_1111
68.2
Naive CD4 T-cell nTPM: 73.2
Samples: 6
Max nTPM: 96.8
Min nTPM: 41.2
P10809_1015
41.2
P10809_1030
89.1
P10809_1049
96.8
P10809_1068
74.0
P10809_1085
73.7
P10809_1112
64.3
Naive CD8 T-cell nTPM: 68.1
Samples: 6
Max nTPM: 78.3
Min nTPM: 44.0
P10809_1016
44.0
P10809_1031
69.9
P10809_1050
72.8
P10809_1069
77.9
P10809_1087
78.3
P10809_1110
65.5
T-reg nTPM: 87.2
Samples: 6
Max nTPM: 110.8
Min nTPM: 73.1
P10809_1018
73.1
P10809_1037
81.7
P10809_1056
82.2
P10809_1075
110.8
P10809_1094
86.3
P10809_1106
89.1
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
58.3
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 50.7
Samples: 4
Max nTPM: 75.5
Min nTPM: 31.6
RHH5202_R3573
75.5
RHH5230_R3602
46.0
RHH5259_R3631
31.6
RHH5288_R3660
49.8
Effector memory CD8 T-cell nTPM: 39.5
Samples: 4
Max nTPM: 56.1
Min nTPM: 32.9
RHH5203_R3574
56.1
RHH5231_R3603
34.9
RHH5260_R3632
33.9
RHH5289_R3661
32.9
MAIT T-cell nTPM: 45.5
Samples: 4
Max nTPM: 57.7
Min nTPM: 33.0
RHH5233_R3605
41.5
RHH5205_R3576
33.0
RHH5262_R3634
57.7
RHH5297_R3663
49.9
Memory CD4 T-cell TFH nTPM: 56.8
Samples: 4
Max nTPM: 69.6
Min nTPM: 42.3
RHH5300_R3666
57.1
RHH5236_R3608
58.0
RHH5265_R3637
42.3
RHH5208_R3579
69.6
Memory CD4 T-cell Th1 nTPM: 53.8
Samples: 4
Max nTPM: 78.3
Min nTPM: 28.4
RHH5210_R3581
72.9
RHH5302_R3668
78.3
RHH5238_R3610
28.4
RHH5267_R3639
35.7
Memory CD4 T-cell Th1/Th17 nTPM: 55.3
Samples: 4
Max nTPM: 89.8
Min nTPM: 27.0
RHH5303_R3669
60.5
RHH5211_R3582
89.8
RHH5239_R3611
27.0
RHH5268_R3640
43.8
Memory CD4 T-cell Th17 nTPM: 42.7
Samples: 4
Max nTPM: 56.8
Min nTPM: 30.4
RHH5304_R3670
37.5
RHH5212_R3583
56.8
RHH5240_R3612
46.2
RHH5269_R3641
30.4
Memory CD4 T-cell Th2 nTPM: 42.2
Samples: 4
Max nTPM: 58.0
Min nTPM: 31.2
RHH5305_R3671
43.2
RHH5213_R3584
58.0
RHH5241_R3613
36.2
RHH5270_R3642
31.2
Naive CD4 T-cell nTPM: 55.0
Samples: 4
Max nTPM: 89.6
Min nTPM: 39.3
RHH5306_R3672
50.8
RHH5214_R3585
89.6
RHH5242_R3614
40.3
RHH5271_R3643
39.3
Naive CD8 T-cell nTPM: 48.5
Samples: 4
Max nTPM: 66.6
Min nTPM: 31.4
RHH5201_R3572
66.6
RHH5229_R3601
31.4
RHH5258_R3630
49.5
RHH5287_R3659
46.4
Non-Vd2 gdTCR nTPM: 53.1
Samples: 4
Max nTPM: 66.5
Min nTPM: 37.3
RHH5235_R3607
37.3
RHH5264_R3636
48.8
RHH5207_R3578
59.6
RHH5299_R3665
66.5
T-reg nTPM: 57.7
Samples: 4
Max nTPM: 68.7
Min nTPM: 43.4
RHH5301_R3667
64.7
RHH5237_R3609
68.7
RHH5266_R3638
43.4
RHH5209_R3580
53.8
Terminal effector memory CD4 T-cell nTPM: 42.8
Samples: 2
Max nTPM: 57.7
Min nTPM: 27.9
RHH5243_R3615
27.9
RHH5272_R3644
57.7
Terminal effector memory CD8 T-cell nTPM: 53.3
Samples: 4
Max nTPM: 90.5
Min nTPM: 26.8
RHH5232_R3604
44.5
RHH5204_R3575
90.5
RHH5261_R3633
26.8
RHH5296_R3662
51.5
Vd2 gdTCR nTPM: 58.3
Samples: 4
Max nTPM: 91.0
Min nTPM: 34.7
RHH5234_R3606
49.4
RHH5206_R3577
91.0
RHH5263_R3635
34.7
RHH5298_R3664
58.2
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
