HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:49.1 nTPM
HPA Brain:39.7 nTPM
GTEx:49.1 nTPM
FANTOM5:56.0 Scaled Tags Per Million
Pig:27.8 nTPM
Mouse:52.5 nTPM
Allen mouse:0.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA072536
Glial cells Medium
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 39.7
Sample id Sample description nTPM
Hippocampus
nTPM: 23.5
1898 Male, age 80, left hemisphere 36.5
2529 Female, age 94, left hemisphere 23.8
2621 Female, age 67, right hemisphere 22.0
1911 Female, age 85, right hemisphere 20.2
1855 Male, age 76, left hemisphere 19.7
2148 Female, age 91, left hemisphere 18.8
Dentate gyrus
nTPM: 23.2
1927 Female, age 91, both hemispheres 28.0
2528 Male, age 74, both hemispheres 26.1
2530 Female, age 94, left hemisphere 25.9
2246 Female, age 85, both hemispheres 23.2
2010 Male, age 76, both hemispheres 19.2
2531 Female, age 67, both hemispheres 16.5
Entorhinal gyrus
nTPM: 30.5
1938 Female, age 85, left hemisphere 36.5
2764 Male, age 80, right hemisphere 35.1
1787 Male, age 76, left hemisphere 32.8
2613 Female, age 94, left hemisphere 27.4
2686 Male, age 75, right hemisphere 26.7
2117 Female, age 91, right hemisphere 24.5
Hippocampus, CA1
nTPM: 24.5
2527 Male, age 74, both hemispheres 30.1
2749 Male, age 80, left hemisphere 24.4
2082 Female, age 91, right hemisphere 23.6
1873 Female, age 85, both hemispheres 23.3
2045 Male, age 76, both hemispheres 21.1
Hippocampus, CA2
nTPM: 30.5
1892 Male, age 76, both hemispheres 43.1
2249 Male, age 74, both hemispheres 37.8
2437 Female, age 94, left hemisphere 32.0
1963 Male, age 80, left hemisphere 24.3
1940 Female, age 85, left hemisphere 24.1
2113 Female, age 91, right hemisphere 21.6
Hippocampus, CA3
nTPM: 28.4
2436 Male, age 74, both hemispheres 51.7
1867 Male, age 76, both hemispheres 35.6
1891 Female, age 85, both hemispheres 26.6
2137 Male, age 80, left hemisphere 20.3
2620 Female, age 94, left hemisphere 20.1
2861 Female, age 67, both hemispheres 15.9
Parahippocampal cortex
nTPM: 31.2
1850 Male, age 80, both hemispheres 40.0
1990 Female, age 91, right hemisphere 38.1
1933 Female, age 85, both hemispheres 36.3
2250 Female, age 67, right hemisphere 34.8
2693 Female, age 94, both hemispheres 34.0
2245 Female, age 91, both hemispheres 28.3
2532 Female, age 72, left hemisphere 27.2
2018 Male, age 76, both hemispheres 26.5
2692 Male, age 74, both hemispheres 24.3
2622 Female, age 67, right hemisphere 22.8
Perirhinal gyrus
nTPM: 39.7
1847 Female, age 91, left hemisphere 50.3
1841 Female, age 85, right hemisphere 41.1
2848 Male, age 76, right hemisphere 37.1
1794 Male, age 80, right hemisphere 36.0
2521 Female, age 94, right hemisphere 33.8
Subiculum
nTPM: 25.7
1977 Female, age 85, both hemispheres 34.6
1901 Male, age 80, both hemispheres 27.6
2619 Male, age 74, both hemispheres 25.8
2438 Female, age 94, left hemisphere 24.9
2729 Female, age 91, right hemisphere 21.6
2042 Male, age 76, both hemispheres 19.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 49.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 49.1
Samples: 197

Max nTPM: 168.0
Min nTPM: 11.8
Std nTPM: 22.2
Median nTPM: 43.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 168.0
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 138.3
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 126.7
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 117.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 102.0
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 99.9
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 98.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 95.4
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 94.5
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 93.2
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 92.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 56.0
FF:10169-103B7 60 years, female 68.5
FF:10153-102I9 76 years, female 43.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 27.8
Pig sample Sample description nTPM
Subiculum
nTPM: 24.0
Samples: 4

Max nTPM: 27.3
Min nTPM: 20.7
Sample A Female 27.3
Sample B Female 23.0
Sample C Male 24.9
Sample D Male 20.7
Dorsal hippocampus
nTPM: 27.9
Samples: 4

Max nTPM: 33.2
Min nTPM: 24.4
Sample A Female 33.2
Sample B Female 29.4
Sample C Male 24.4
Sample D Male 24.4
Entorhinal cortex
nTPM: 24.5
Samples: 4

Max nTPM: 28.1
Min nTPM: 21.7
Sample A Female 26.0
Sample B Female 28.1
Sample C Male 22.2
Sample D Male 21.7
Ventral hippocampus
nTPM: 27.9
Samples: 4

Max nTPM: 34.0
Min nTPM: 24.0
Sample A Female 34.0
Sample B Female 24.0
Sample C Male 29.0
Sample D Male 24.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 52.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 52.5
Samples: 4

Max nTPM: 56.7
Min nTPM: 47.9
Sample A Male 50.8
Sample B Male 56.7
Sample C Female 54.4
Sample D Female 47.9
Hippocampal formation
nTPM: 48.0
Samples: 4

Max nTPM: 53.2
Min nTPM: 44.7
Sample A Male 53.2
Sample B Male 47.1
Sample C Female 44.7
Sample D Female 46.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.7
77620427 Antisense, RP_070205_01_H08, Mouse strain C57BL/6J (56 days, male) 0.7
77414600 Antisense, RP_070205_01_H08, Mouse strain C57BL/6J (56 days, male) 0.1

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