MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:55.8 nTPM
HPA Brain:34.7 nTPM
GTEx:55.8 nTPM
FANTOM5:52.8 Scaled Tags Per Million
Pig:29.0 nTPM
Mouse:48.6 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.1
2411 Female, age 72, unknown 36.1
2019 Male, age 18, unknown 34.6
1870 Female, age 42, unknown 31.6
1827 Male, age 72, unknown 31.3
2219 Male, age 76, both hemispheres 27.2
1833 Male, age 53, unknown 26.1
2828 Female, age 72, unknown 26.1
1830 Male, age 51, unknown 24.7
2666 Male, age 74, left hemisphere 23.4
2586 Male, age 75, left hemisphere 19.4
Dorsal raphe nucleus
nTPM: 31.3
2298 Female, age 72, unknown 37.8
2047 Male, age 72, unknown 34.6
1828 Male, age 53, unknown 30.0
2750 Male, age 76, both hemispheres 29.4
2016 Female, age 72, unknown 25.0
Inferior colliculus
nTPM: 31.3
2097 Female, age 72, unknown 41.7
1848 Female, age 42, unknown 30.3
1890 Male, age 53, unknown 28.0
2849 Male, age 72, unknown 25.1
Median raphe nucleus
nTPM: 30.5
2220 Male, age 76, midline 30.5
Periaquaductal grey, anterior
nTPM: 28.0
1947 Male, age 18, unknown 31.1
1795 Male, age 51, unknown 28.4
2502 Female, age 75, unknown 24.4
Periaquaductal grey, dorsal
nTPM: 26.6
1840 Male, age 53, unknown 30.1
1831 Male, age 72, unknown 25.9
2464 Female, age 72, unknown 25.2
2850 Male, age 76, both hemispheres 25.0
Periaquaductal grey, lateral
nTPM: 25.5
2272 Male, age 74, both hemispheres 26.9
2053 Male, age 18, unknown 26.5
2140 Male, age 76, both hemispheres 23.0
Pretectal area
nTPM: 34.7
1944 Female, age 72, unknown 45.2
2007 Male, age 72, unknown 42.1
1817 Female, age 42, unknown 38.7
1816 Male, age 51, unknown 37.9
2224 Female, age 72, unknown 36.7
2273 Male, age 74, both hemispheres 35.8
2667 Female, age 75, unknown 32.9
1815 Male, age 53, unknown 32.2
2407 Male, age 75, both hemispheres 27.5
2316 Male, age 76, right hemisphere 27.1
2825 Male, age 18, unknown 25.5
Red nucleus
nTPM: 23.0
1821 Female, age 72, unknown 30.7
2785 Male, age 18, unknown 28.3
2725 Female, age 75, unknown 25.9
2823 Male, age 76, right hemisphere 23.4
2503 Female, age 72, unknown 22.1
2584 Male, age 75, left hemisphere 21.8
1954 Female, age 42, unknown 21.6
2769 Male, age 72, unknown 21.5
1904 Male, age 53, unknown 21.4
1865 Male, age 51, unknown 20.7
2227 Male, age 72, unknown 20.3
2588 Male, age 74, left hemisphere 18.0
Substantia nigra
nTPM: 29.0
1941 Male, age 53, unknown 38.8
1889 Female, age 72, unknown 37.6
2241 Male, age 72, unknown 35.4
1916 Female, age 42, unknown 31.5
1851 Male, age 51, unknown 30.1
2590 Female, age 75, unknown 26.6
2409 Female, age 72, unknown 24.5
2665 Male, age 74, both hemispheres 22.6
2583 Male, age 75, right hemisphere 22.0
2699 Male, age 18, unknown 20.8
Superior colliculus
nTPM: 28.2
1895 Male, age 76, right hemisphere 34.9
2087 Female, age 72, unknown 34.0
2587 Male, age 74, left hemisphere 33.0
2668 Female, age 75, unknown 30.8
2261 Male, age 18, unknown 27.9
1796 Male, age 53, unknown 26.8
1839 Male, age 51, unknown 26.8
1913 Female, age 42, unknown 24.6
2664 Male, age 75, both hemispheres 22.1
1995 Male, age 72, unknown 21.2
Ventral tegmental area
nTPM: 28.8
2410 Female, age 72, unknown 32.3
1915 Female, age 42, unknown 31.4
1942 Male, age 51, unknown 30.2
2218 Male, age 76, both hemispheres 27.9
2021 Male, age 53, unknown 25.9
2223 Female, age 72, unknown 24.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 55.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 55.8
Samples: 139

Max nTPM: 175.5
Min nTPM: 15.4
Std nTPM: 20.0
Median nTPM: 52.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 175.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 137.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 99.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 91.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 89.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 89.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 87.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 86.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 86.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 85.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 82.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.8
FF:10158-103A5 76 years, female 52.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.5
Samples: 4

Max nTPM: 33.5
Min nTPM: 14.5
Sample A Female 33.5
Sample B Female 22.5
Sample C Male 27.4
Sample D Male 14.5
Midbrain
nTPM: 28.3
Samples: 4

Max nTPM: 32.8
Min nTPM: 25.5
Sample A Female 27.4
Sample B Female 25.5
Sample C Male 32.8
Sample D Male 27.3
Periaqueductal gray
nTPM: 22.8
Samples: 3

Max nTPM: 24.3
Min nTPM: 21.3
Sample B Female 21.3
Sample C Male 24.3
Sample D Male 22.9
Superior colliculi
nTPM: 29.0
Samples: 4

Max nTPM: 35.1
Min nTPM: 22.9
Sample A Female 29.7
Sample B Female 22.9
Sample C Male 35.1
Sample D Male 28.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 48.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 48.6
Samples: 4

Max nTPM: 50.3
Min nTPM: 45.4
Sample A Male 45.4
Sample B Male 48.6
Sample C Female 50.2
Sample D Female 50.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
77620427 Antisense, RP_070205_01_H08, Mouse strain C57BL/6J (56 days, male) 0.5
77414600 Antisense, RP_070205_01_H08, Mouse strain C57BL/6J (56 days, male) 0.0

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