MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:100.9 nTPM
HPA Brain:167.0 nTPM
GTEx:100.9 nTPM
FANTOM5:23.6 Scaled Tags Per Million
Pig:99.8 nTPM
Mouse:315.9 nTPM
Allen mouse:14.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 167.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 96.1
2219 Male, age 76, both hemispheres 121.9
1827 Male, age 72, unknown 118.5
2411 Female, age 72, unknown 118.1
2666 Male, age 74, left hemisphere 108.5
2828 Female, age 72, unknown 103.0
2019 Male, age 18, unknown 93.7
1870 Female, age 42, unknown 82.7
1833 Male, age 53, unknown 78.5
1830 Male, age 51, unknown 68.6
2586 Male, age 75, left hemisphere 67.6
Dorsal raphe nucleus
nTPM: 120.0
2298 Female, age 72, unknown 165.9
2750 Male, age 76, both hemispheres 140.7
2047 Male, age 72, unknown 129.6
1828 Male, age 53, unknown 100.7
2016 Female, age 72, unknown 63.1
Inferior colliculus
nTPM: 81.3
2097 Female, age 72, unknown 107.0
1848 Female, age 42, unknown 79.7
1890 Male, age 53, unknown 71.4
2849 Male, age 72, unknown 67.1
Median raphe nucleus
nTPM: 167.0
2220 Male, age 76, midline 167.0
Periaquaductal grey, anterior
nTPM: 119.8
1795 Male, age 51, unknown 132.5
1947 Male, age 18, unknown 120.9
2502 Female, age 75, unknown 106.0
Periaquaductal grey, dorsal
nTPM: 75.1
1840 Male, age 53, unknown 84.4
1831 Male, age 72, unknown 78.1
2850 Male, age 76, both hemispheres 70.1
2464 Female, age 72, unknown 67.7
Periaquaductal grey, lateral
nTPM: 67.6
2053 Male, age 18, unknown 71.3
2272 Male, age 74, both hemispheres 68.6
2140 Male, age 76, both hemispheres 63.1
Pretectal area
nTPM: 108.5
1816 Male, age 51, unknown 165.2
1944 Female, age 72, unknown 159.3
2007 Male, age 72, unknown 141.4
2667 Female, age 75, unknown 140.6
1817 Female, age 42, unknown 136.1
1815 Male, age 53, unknown 111.3
2224 Female, age 72, unknown 103.8
2825 Male, age 18, unknown 78.2
2316 Male, age 76, right hemisphere 57.0
2273 Male, age 74, both hemispheres 56.0
2407 Male, age 75, both hemispheres 44.5
Red nucleus
nTPM: 76.3
1821 Female, age 72, unknown 97.2
2785 Male, age 18, unknown 89.5
2584 Male, age 75, left hemisphere 87.0
1954 Female, age 42, unknown 83.3
2227 Male, age 72, unknown 74.7
2769 Male, age 72, unknown 73.3
2503 Female, age 72, unknown 73.1
1904 Male, age 53, unknown 70.5
2588 Male, age 74, left hemisphere 70.5
1865 Male, age 51, unknown 66.3
2823 Male, age 76, right hemisphere 65.5
2725 Female, age 75, unknown 64.9
Substantia nigra
nTPM: 142.6
1916 Female, age 42, unknown 235.9
2665 Male, age 74, both hemispheres 197.8
1941 Male, age 53, unknown 169.1
1851 Male, age 51, unknown 166.9
1889 Female, age 72, unknown 138.3
2409 Female, age 72, unknown 138.0
2241 Male, age 72, unknown 120.6
2699 Male, age 18, unknown 101.6
2590 Female, age 75, unknown 83.9
2583 Male, age 75, right hemisphere 74.2
Superior colliculus
nTPM: 88.5
2087 Female, age 72, unknown 143.0
1796 Male, age 53, unknown 123.0
2668 Female, age 75, unknown 122.9
2261 Male, age 18, unknown 110.6
1895 Male, age 76, right hemisphere 83.4
1913 Female, age 42, unknown 70.6
1839 Male, age 51, unknown 70.1
2587 Male, age 74, left hemisphere 62.5
1995 Male, age 72, unknown 53.9
2664 Male, age 75, both hemispheres 45.6
Ventral tegmental area
nTPM: 130.8
2410 Female, age 72, unknown 192.9
2218 Male, age 76, both hemispheres 174.9
1915 Female, age 42, unknown 149.4
1942 Male, age 51, unknown 99.4
2021 Male, age 53, unknown 85.3
2223 Female, age 72, unknown 83.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 100.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 100.9
Samples: 139

Max nTPM: 414.3
Min nTPM: 13.2
Std nTPM: 85.1
Median nTPM: 72.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 414.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 407.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 347.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 331.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 283.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 278.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 276.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 271.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 263.9
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 250.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 233.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.6
FF:10158-103A5 76 years, female 23.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 99.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 99.8
Samples: 4

Max nTPM: 162.7
Min nTPM: 20.8
Sample A Female 162.7
Sample B Female 65.4
Sample C Male 150.2
Sample D Male 20.8
Midbrain
nTPM: 84.5
Samples: 4

Max nTPM: 157.9
Min nTPM: 18.0
Sample A Female 18.0
Sample B Female 66.1
Sample C Male 157.9
Sample D Male 96.1
Periaqueductal gray
nTPM: 65.9
Samples: 3

Max nTPM: 97.4
Min nTPM: 47.3
Sample B Female 53.0
Sample C Male 97.4
Sample D Male 47.3
Superior colliculi
nTPM: 93.3
Samples: 4

Max nTPM: 143.2
Min nTPM: 55.3
Sample A Female 89.9
Sample B Female 55.3
Sample C Male 143.2
Sample D Male 84.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 315.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 315.9
Samples: 4

Max nTPM: 337.2
Min nTPM: 291.6
Sample A Male 337.2
Sample B Male 302.4
Sample C Female 291.6
Sample D Female 332.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.6
146 Antisense, RP_040315_01_11, Mouse strain C57BL/6J (56 days, male) 14.6
145 Antisense, RP_040315_01_11, Mouse strain C57BL/6J (56 days, male) 13.2

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