MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.3 nTPM
HPA Brain:48.4 nTPM
GTEx:20.3 nTPM
FANTOM5:16.0 Scaled Tags Per Million
Pig:16.5 nTPM
Mouse:11.1 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.4
2586 Male, age 75, left hemisphere 63.2
2219 Male, age 76, both hemispheres 53.4
1833 Male, age 53, unknown 50.8
2019 Male, age 18, unknown 47.3
2828 Female, age 72, unknown 47.3
1830 Male, age 51, unknown 46.3
2666 Male, age 74, left hemisphere 45.4
1827 Male, age 72, unknown 43.6
1870 Female, age 42, unknown 43.6
2411 Female, age 72, unknown 43.1
Dorsal raphe nucleus
nTPM: 40.9
2047 Male, age 72, unknown 46.8
2750 Male, age 76, both hemispheres 43.6
1828 Male, age 53, unknown 41.2
2016 Female, age 72, unknown 37.2
2298 Female, age 72, unknown 35.8
Inferior colliculus
nTPM: 41.2
2849 Male, age 72, unknown 45.8
1848 Female, age 42, unknown 43.4
1890 Male, age 53, unknown 41.4
2097 Female, age 72, unknown 34.2
Median raphe nucleus
nTPM: 40.6
2220 Male, age 76, midline 40.6
Periaquaductal grey, anterior
nTPM: 45.9
2502 Female, age 75, unknown 48.4
1795 Male, age 51, unknown 44.8
1947 Male, age 18, unknown 44.6
Periaquaductal grey, dorsal
nTPM: 37.3
1840 Male, age 53, unknown 39.2
2464 Female, age 72, unknown 39.2
1831 Male, age 72, unknown 37.0
2850 Male, age 76, both hemispheres 33.8
Periaquaductal grey, lateral
nTPM: 35.3
2053 Male, age 18, unknown 38.2
2140 Male, age 76, both hemispheres 35.7
2272 Male, age 74, both hemispheres 32.0
Pretectal area
nTPM: 40.0
2407 Male, age 75, both hemispheres 50.5
2007 Male, age 72, unknown 46.2
2667 Female, age 75, unknown 43.1
2825 Male, age 18, unknown 41.2
1817 Female, age 42, unknown 40.1
1816 Male, age 51, unknown 39.8
2224 Female, age 72, unknown 38.7
1815 Male, age 53, unknown 37.8
2316 Male, age 76, right hemisphere 37.3
1944 Female, age 72, unknown 35.1
2273 Male, age 74, both hemispheres 30.4
Red nucleus
nTPM: 47.5
2584 Male, age 75, left hemisphere 61.0
2588 Male, age 74, left hemisphere 55.4
2769 Male, age 72, unknown 48.8
2823 Male, age 76, right hemisphere 48.1
1904 Male, age 53, unknown 47.3
2227 Male, age 72, unknown 47.2
2785 Male, age 18, unknown 46.4
1865 Male, age 51, unknown 44.7
1954 Female, age 42, unknown 43.8
2725 Female, age 75, unknown 43.4
1821 Female, age 72, unknown 43.1
2503 Female, age 72, unknown 40.2
Substantia nigra
nTPM: 45.5
2665 Male, age 74, both hemispheres 55.0
2583 Male, age 75, right hemisphere 54.6
1851 Male, age 51, unknown 48.4
1916 Female, age 42, unknown 47.4
2699 Male, age 18, unknown 46.8
2409 Female, age 72, unknown 44.6
2590 Female, age 75, unknown 42.5
1941 Male, age 53, unknown 42.4
1889 Female, age 72, unknown 38.6
2241 Male, age 72, unknown 34.9
Superior colliculus
nTPM: 43.6
2664 Male, age 75, both hemispheres 58.1
1839 Male, age 51, unknown 45.3
1895 Male, age 76, right hemisphere 45.1
2668 Female, age 75, unknown 43.7
1796 Male, age 53, unknown 43.0
1913 Female, age 42, unknown 42.8
2087 Female, age 72, unknown 41.2
1995 Male, age 72, unknown 40.1
2261 Male, age 18, unknown 39.4
2587 Male, age 74, left hemisphere 37.4
Ventral tegmental area
nTPM: 44.4
2223 Female, age 72, unknown 51.1
2410 Female, age 72, unknown 46.4
1942 Male, age 51, unknown 44.1
2021 Male, age 53, unknown 43.7
2218 Male, age 76, both hemispheres 42.6
1915 Female, age 42, unknown 38.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.3
Samples: 139

Max nTPM: 37.2
Min nTPM: 10.0
Std nTPM: 4.4
Median nTPM: 20.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 37.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 32.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 31.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 30.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 29.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 28.6
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 28.4
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 28.2
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 27.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 27.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 25.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.0
FF:10158-103A5 76 years, female 16.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.8
Samples: 4

Max nTPM: 17.8
Min nTPM: 14.5
Sample A Female 15.8
Sample B Female 14.9
Sample C Male 17.8
Sample D Male 14.5
Midbrain
nTPM: 15.7
Samples: 4

Max nTPM: 21.1
Min nTPM: 11.5
Sample A Female 14.4
Sample B Female 11.5
Sample C Male 21.1
Sample D Male 15.8
Periaqueductal gray
nTPM: 12.8
Samples: 3

Max nTPM: 15.0
Min nTPM: 11.1
Sample B Female 11.1
Sample C Male 15.0
Sample D Male 12.3
Superior colliculi
nTPM: 16.6
Samples: 4

Max nTPM: 17.5
Min nTPM: 15.3
Sample A Female 15.3
Sample B Female 16.0
Sample C Male 17.4
Sample D Male 17.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.1
Samples: 4

Max nTPM: 11.9
Min nTPM: 10.3
Sample A Male 11.9
Sample B Male 10.3
Sample C Female 11.0
Sample D Female 11.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
71211359 Antisense, RP_050816_01_D01, Mouse strain C57BL/6J (56 days, male) 0.3

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