HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:25.0 nTPM
HPA Brain:55.5 nTPM
GTEx:25.0 nTPM
FANTOM5:14.2 Scaled Tags Per Million
Pig:34.4 nTPM
Mouse:36.4 nTPM
Allen mouse:2.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003422
Glial cells Not detected
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 55.5
Sample id Sample description nTPM
Hippocampus
nTPM: 53.7
2148 Female, age 91, left hemisphere 61.1
2621 Female, age 67, right hemisphere 57.7
2529 Female, age 94, left hemisphere 54.2
1855 Male, age 76, left hemisphere 53.5
1911 Female, age 85, right hemisphere 53.0
1898 Male, age 80, left hemisphere 42.8
Dentate gyrus
nTPM: 54.2
2531 Female, age 67, both hemispheres 75.8
1927 Female, age 91, both hemispheres 55.1
2530 Female, age 94, left hemisphere 52.2
2528 Male, age 74, both hemispheres 51.9
2010 Male, age 76, both hemispheres 46.9
2246 Female, age 85, both hemispheres 43.5
Entorhinal gyrus
nTPM: 54.7
2613 Female, age 94, left hemisphere 69.8
1787 Male, age 76, left hemisphere 56.0
2686 Male, age 75, right hemisphere 54.1
2764 Male, age 80, right hemisphere 54.1
2117 Female, age 91, right hemisphere 50.2
1938 Female, age 85, left hemisphere 44.3
Hippocampus, CA1
nTPM: 49.4
1873 Female, age 85, both hemispheres 52.1
2045 Male, age 76, both hemispheres 52.1
2527 Male, age 74, both hemispheres 49.0
2082 Female, age 91, right hemisphere 46.9
2749 Male, age 80, left hemisphere 46.7
Hippocampus, CA2
nTPM: 50.0
2437 Female, age 94, left hemisphere 57.5
1892 Male, age 76, both hemispheres 52.2
1963 Male, age 80, left hemisphere 52.1
1940 Female, age 85, left hemisphere 48.9
2113 Female, age 91, right hemisphere 48.1
2249 Male, age 74, both hemispheres 40.9
Hippocampus, CA3
nTPM: 55.5
2861 Female, age 67, both hemispheres 78.8
2620 Female, age 94, left hemisphere 66.2
2137 Male, age 80, left hemisphere 54.5
1867 Male, age 76, both hemispheres 48.3
1891 Female, age 85, both hemispheres 45.1
2436 Male, age 74, both hemispheres 40.2
Parahippocampal cortex
nTPM: 54.4
2622 Female, age 67, right hemisphere 75.3
2693 Female, age 94, both hemispheres 60.1
2245 Female, age 91, both hemispheres 56.6
2532 Female, age 72, left hemisphere 55.9
2692 Male, age 74, both hemispheres 55.7
1990 Female, age 91, right hemisphere 50.5
2250 Female, age 67, right hemisphere 50.5
1933 Female, age 85, both hemispheres 48.2
1850 Male, age 80, both hemispheres 46.0
2018 Male, age 76, both hemispheres 45.6
Perirhinal gyrus
nTPM: 52.8
2521 Female, age 94, right hemisphere 53.0
1794 Male, age 80, right hemisphere 52.8
2848 Male, age 76, right hemisphere 52.8
1847 Female, age 91, left hemisphere 52.7
1841 Female, age 85, right hemisphere 52.6
Subiculum
nTPM: 47.1
2619 Male, age 74, both hemispheres 52.2
2729 Female, age 91, right hemisphere 50.1
2042 Male, age 76, both hemispheres 47.6
2438 Female, age 94, left hemisphere 45.0
1901 Male, age 80, both hemispheres 44.5
1977 Female, age 85, both hemispheres 43.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 25.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 25.0
Samples: 197

Max nTPM: 41.4
Min nTPM: 9.5
Std nTPM: 5.7
Median nTPM: 25.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 41.4
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 39.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 39.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 38.9
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 37.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 36.6
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 34.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 34.8
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 34.1
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 33.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 33.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 14.2
FF:10153-102I9 76 years, female 18.1
FF:10169-103B7 60 years, female 10.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 34.4
Pig sample Sample description nTPM
Subiculum
nTPM: 22.0
Samples: 4

Max nTPM: 26.5
Min nTPM: 17.9
Sample A Female 26.5
Sample B Female 17.9
Sample C Male 21.3
Sample D Male 22.2
Dorsal hippocampus
nTPM: 15.6
Samples: 4

Max nTPM: 16.5
Min nTPM: 14.9
Sample A Female 16.5
Sample B Female 15.6
Sample C Male 15.2
Sample D Male 14.9
Entorhinal cortex
nTPM: 34.4
Samples: 4

Max nTPM: 40.2
Min nTPM: 27.3
Sample A Female 40.2
Sample B Female 27.3
Sample C Male 38.9
Sample D Male 31.2
Ventral hippocampus
nTPM: 16.2
Samples: 4

Max nTPM: 24.5
Min nTPM: 12.1
Sample A Female 13.7
Sample B Female 12.1
Sample C Male 24.5
Sample D Male 14.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 36.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 36.4
Samples: 4

Max nTPM: 47.0
Min nTPM: 22.1
Sample A Male 39.8
Sample B Male 47.0
Sample C Female 22.1
Sample D Female 36.6
Hippocampal formation
nTPM: 25.2
Samples: 4

Max nTPM: 27.7
Min nTPM: 22.5
Sample A Male 23.6
Sample B Male 27.7
Sample C Female 22.5
Sample D Female 26.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.2
71211359 Antisense, RP_050816_01_D01, Mouse strain C57BL/6J (56 days, male) 2.2

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