MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.8 nTPM
HPA Brain:11.2 nTPM
GTEx:1.8 nTPM
FANTOM5:0.0 Scaled Tags Per Million
Pig:2.4 nTPM
Mouse:23.0 nTPM
Allen mouse:5.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 11.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 5.2
2219 Male, age 76, both hemispheres 9.9
2411 Female, age 72, unknown 6.3
1827 Male, age 72, unknown 6.1
1833 Male, age 53, unknown 5.7
1870 Female, age 42, unknown 4.8
1830 Male, age 51, unknown 4.5
2586 Male, age 75, left hemisphere 4.3
2666 Male, age 74, left hemisphere 4.3
2828 Female, age 72, unknown 4.3
2019 Male, age 18, unknown 1.9
Dorsal raphe nucleus
nTPM: 8.0
2298 Female, age 72, unknown 11.6
2047 Male, age 72, unknown 11.3
2750 Male, age 76, both hemispheres 7.0
1828 Male, age 53, unknown 5.4
2016 Female, age 72, unknown 4.9
Inferior colliculus
nTPM: 5.3
2849 Male, age 72, unknown 7.1
2097 Female, age 72, unknown 5.1
1848 Female, age 42, unknown 4.7
1890 Male, age 53, unknown 4.2
Median raphe nucleus
nTPM: 11.2
2220 Male, age 76, midline 11.2
Periaquaductal grey, anterior
nTPM: 7.0
1795 Male, age 51, unknown 7.4
1947 Male, age 18, unknown 6.9
2502 Female, age 75, unknown 6.7
Periaquaductal grey, dorsal
nTPM: 6.5
1840 Male, age 53, unknown 8.9
2850 Male, age 76, both hemispheres 5.9
2464 Female, age 72, unknown 5.5
1831 Male, age 72, unknown 5.4
Periaquaductal grey, lateral
nTPM: 5.5
2140 Male, age 76, both hemispheres 6.7
2053 Male, age 18, unknown 5.7
2272 Male, age 74, both hemispheres 4.2
Pretectal area
nTPM: 4.8
2825 Male, age 18, unknown 8.8
2224 Female, age 72, unknown 8.6
2407 Male, age 75, both hemispheres 5.8
2316 Male, age 76, right hemisphere 5.1
2667 Female, age 75, unknown 4.6
2007 Male, age 72, unknown 4.0
2273 Male, age 74, both hemispheres 3.8
1816 Male, age 51, unknown 3.5
1815 Male, age 53, unknown 3.4
1944 Female, age 72, unknown 3.1
1817 Female, age 42, unknown 2.1
Red nucleus
nTPM: 2.2
2584 Male, age 75, left hemisphere 4.7
2725 Female, age 75, unknown 4.0
2227 Male, age 72, unknown 2.3
2588 Male, age 74, left hemisphere 2.2
2769 Male, age 72, unknown 2.2
1821 Female, age 72, unknown 1.9
2823 Male, age 76, right hemisphere 1.9
1954 Female, age 42, unknown 1.8
2503 Female, age 72, unknown 1.7
2785 Male, age 18, unknown 1.6
1904 Male, age 53, unknown 1.5
1865 Male, age 51, unknown 0.7
Substantia nigra
nTPM: 5.8
1916 Female, age 42, unknown 10.6
2241 Male, age 72, unknown 8.6
1851 Male, age 51, unknown 8.3
2699 Male, age 18, unknown 6.6
1941 Male, age 53, unknown 5.3
2409 Female, age 72, unknown 4.6
2665 Male, age 74, both hemispheres 4.4
1889 Female, age 72, unknown 4.3
2583 Male, age 75, right hemisphere 2.6
2590 Female, age 75, unknown 2.6
Superior colliculus
nTPM: 4.4
2664 Male, age 75, both hemispheres 7.8
1839 Male, age 51, unknown 6.6
1796 Male, age 53, unknown 6.2
1895 Male, age 76, right hemisphere 5.3
2587 Male, age 74, left hemisphere 4.9
2668 Female, age 75, unknown 4.4
2261 Male, age 18, unknown 4.2
2087 Female, age 72, unknown 2.6
1913 Female, age 42, unknown 1.6
1995 Male, age 72, unknown 0.5
Ventral tegmental area
nTPM: 7.5
1915 Female, age 42, unknown 9.0
2218 Male, age 76, both hemispheres 8.5
2021 Male, age 53, unknown 8.1
1942 Male, age 51, unknown 7.0
2410 Female, age 72, unknown 7.0
2223 Female, age 72, unknown 5.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.8
Samples: 139

Max nTPM: 7.8
Min nTPM: 0.0
Std nTPM: 1.7
Median nTPM: 1.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 7.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 7.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 6.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 6.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 5.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 5.9
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 5.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 5.4
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 5.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 5.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 5.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.0
FF:10158-103A5 76 years, female 0.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 2.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.9
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.5
Sample A Female 1.0
Sample B Female 1.2
Sample C Male 0.9
Sample D Male 0.5
Midbrain
nTPM: 0.9
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.6
Sample A Female 0.6
Sample B Female 1.2
Sample C Male 1.2
Sample D Male 0.7
Periaqueductal gray
nTPM: 1.8
Samples: 3

Max nTPM: 1.9
Min nTPM: 1.7
Sample B Female 1.7
Sample C Male 1.9
Sample D Male 1.7
Superior colliculi
nTPM: 2.4
Samples: 4

Max nTPM: 6.4
Min nTPM: 0.8
Sample A Female 1.2
Sample B Female 6.4
Sample C Male 1.3
Sample D Male 0.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.0
Samples: 4

Max nTPM: 24.8
Min nTPM: 21.2
Sample A Male 22.9
Sample B Male 23.1
Sample C Female 21.2
Sample D Female 24.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.5
130535 Antisense, RP_040507_03_B08, Mouse strain C57BL/6J (56 days, male) 5.5

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