HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:31.7 nTPM
HPA Brain:218.0 nTPM
GTEx:31.7 nTPM
FANTOM5:250.3 Scaled Tags Per Million
Pig:214.3 nTPM
Mouse:338.6 nTPM
Allen mouse:21.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003995Antibody HPA005700Antibody HPA030069Antibody CAB004229Antibody CAB079932Antibody CAB079933
Glial cells LowHighLowHighLowMedium
Neuronal cells MediumHighMediumHighHighHigh













HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 218.0
Sample id Sample description nTPM
Hippocampus
nTPM: 159.8
1898 Male, age 80, left hemisphere 206.2
1855 Male, age 76, left hemisphere 187.5
2621 Female, age 67, right hemisphere 155.0
2148 Female, age 91, left hemisphere 141.4
1911 Female, age 85, right hemisphere 139.3
2529 Female, age 94, left hemisphere 129.6
Dentate gyrus
nTPM: 164.4
2246 Female, age 85, both hemispheres 199.1
2010 Male, age 76, both hemispheres 196.9
1927 Female, age 91, both hemispheres 177.8
2531 Female, age 67, both hemispheres 144.2
2530 Female, age 94, left hemisphere 138.0
2528 Male, age 74, both hemispheres 130.6
Entorhinal gyrus
nTPM: 145.9
1938 Female, age 85, left hemisphere 176.8
2764 Male, age 80, right hemisphere 164.6
1787 Male, age 76, left hemisphere 162.4
2613 Female, age 94, left hemisphere 149.6
2117 Female, age 91, right hemisphere 121.8
2686 Male, age 75, right hemisphere 99.8
Hippocampus, CA1
nTPM: 196.7
2749 Male, age 80, left hemisphere 288.6
2045 Male, age 76, both hemispheres 224.0
1873 Female, age 85, both hemispheres 195.8
2082 Female, age 91, right hemisphere 140.2
2527 Male, age 74, both hemispheres 135.1
Hippocampus, CA2
nTPM: 149.2
1892 Male, age 76, both hemispheres 195.5
1963 Male, age 80, left hemisphere 177.1
1940 Female, age 85, left hemisphere 156.6
2113 Female, age 91, right hemisphere 128.5
2437 Female, age 94, left hemisphere 120.2
2249 Male, age 74, both hemispheres 117.2
Hippocampus, CA3
nTPM: 165.5
2137 Male, age 80, left hemisphere 237.9
2620 Female, age 94, left hemisphere 191.4
1867 Male, age 76, both hemispheres 165.0
1891 Female, age 85, both hemispheres 139.9
2436 Male, age 74, both hemispheres 134.7
2861 Female, age 67, both hemispheres 123.9
Parahippocampal cortex
nTPM: 154.5
1850 Male, age 80, both hemispheres 214.2
1933 Female, age 85, both hemispheres 180.1
2245 Female, age 91, both hemispheres 164.3
2018 Male, age 76, both hemispheres 161.7
2250 Female, age 67, right hemisphere 160.8
2693 Female, age 94, both hemispheres 154.4
1990 Female, age 91, right hemisphere 145.5
2532 Female, age 72, left hemisphere 136.6
2622 Female, age 67, right hemisphere 119.7
2692 Male, age 74, both hemispheres 107.3
Perirhinal gyrus
nTPM: 218.0
1847 Female, age 91, left hemisphere 250.0
2521 Female, age 94, right hemisphere 226.9
1794 Male, age 80, right hemisphere 224.0
1841 Female, age 85, right hemisphere 218.8
2848 Male, age 76, right hemisphere 170.3
Subiculum
nTPM: 136.9
1977 Female, age 85, both hemispheres 168.2
1901 Male, age 80, both hemispheres 153.5
2438 Female, age 94, left hemisphere 138.3
2042 Male, age 76, both hemispheres 130.0
2729 Female, age 91, right hemisphere 125.0
2619 Male, age 74, both hemispheres 106.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 31.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 31.7
Samples: 197

Max nTPM: 85.5
Min nTPM: 13.8
Std nTPM: 12.4
Median nTPM: 28.5
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 85.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 77.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 64.3
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 61.6
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 60.5
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 59.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 57.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 56.9
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 55.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 55.0
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 54.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 250.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 250.3
FF:10169-103B7 60 years, female 314.6
FF:10153-102I9 76 years, female 185.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 214.3
Pig sample Sample description nTPM
Subiculum
nTPM: 199.3
Samples: 4

Max nTPM: 242.8
Min nTPM: 178.8
Sample A Female 242.8
Sample B Female 190.2
Sample C Male 185.2
Sample D Male 178.8
Dorsal hippocampus
nTPM: 214.3
Samples: 4

Max nTPM: 263.2
Min nTPM: 151.6
Sample A Female 263.2
Sample B Female 258.0
Sample C Male 151.6
Sample D Male 184.4
Entorhinal cortex
nTPM: 184.5
Samples: 4

Max nTPM: 214.6
Min nTPM: 158.5
Sample A Female 214.6
Sample B Female 185.1
Sample C Male 179.6
Sample D Male 158.5
Ventral hippocampus
nTPM: 199.5
Samples: 4

Max nTPM: 236.4
Min nTPM: 141.0
Sample A Female 223.3
Sample B Female 141.0
Sample C Male 236.4
Sample D Male 197.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 338.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 322.4
Samples: 4

Max nTPM: 382.1
Min nTPM: 285.3
Sample A Male 285.3
Sample B Male 315.1
Sample C Female 307.2
Sample D Female 382.1
Hippocampal formation
nTPM: 338.6
Samples: 4

Max nTPM: 361.1
Min nTPM: 288.7
Sample A Male 361.1
Sample B Male 353.5
Sample C Female 351.2
Sample D Female 288.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 21.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 21.5
68744976 Antisense, RP_050210_01_A07, Mouse strain C57BL/6J (56 days, male) 21.5

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